New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 279841NA (NA)20 (0.170) 9/168 NT NA noncoding (90/768 nt) IS1 repeat region
?NC_000913 = 279852 NA (NA)noncoding (79/768 nt) IS1 repeat region

AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAT  >  NC_000913/279834‑279950
                  |                                                                                                  
aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag                   <  2:1191387/100‑1 (MQ=11)
 gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                  <  1:898376/100‑1 (MQ=31)
 gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga                  >  2:237484/1‑100 (MQ=31)
  tAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGaa                 <  1:1983588/100‑1 (MQ=32)
   agttGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac                >  2:2806243/4‑100 (MQ=18)
   aGCTGAACAGGAGGGACAGCTGATAGAAACTGAAGCTACTGGAACACATCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac                <  1:552831/100‑1 (MQ=11)
   aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCTACTGGAGCACCTCAAACACACCATCATACACTAATTCAGTAAGTTGGCAGCATCACCGAGAac                <  1:308760/100‑1 (MQ=255)
   aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCGTACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac                >  2:2323081/1‑100 (MQ=18)
   aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgagatc                >  1:874228/1‑98 (MQ=14)
    gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca               >  1:116393/1‑100 (MQ=35)
    gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca               >  2:1638375/1‑100 (MQ=35)
    gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca               >  2:1510514/1‑100 (MQ=35)
       gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaa            >  2:71094/1‑100 (MQ=38)
        aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa           <  2:3207806/100‑1 (MQ=40)
        aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa           <  1:1358548/100‑1 (MQ=40)
         aCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAAt          >  2:2092038/1‑100 (MQ=40)
          cAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATg         >  2:1868208/1‑100 (MQ=255)
           aggaggGACAGCTGATAGAAACAGAAGCAACTGGATCATCTCAAAAACACCAACATACACTAAATCAGTATGTTGGCAGCATCACCGAGAACACAAATgg        >  1:470211/1‑100 (MQ=14)
            ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg       >  2:2281899/1‑100 (MQ=255)
            ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg       <  2:860527/100‑1 (MQ=255)
            ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg       <  2:1340974/100‑1 (MQ=255)
             gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggga      >  2:1536239/1‑99 (MQ=255)
             gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGc      <  1:639556/100‑1 (MQ=255)
             gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGc      <  1:3021223/100‑1 (MQ=255)
              agtgACAGCTGATAGAAAGAGAAGCGATTGACGTACCAGAAAAACACCATCATGTACTAATTGAGGATGTTGGCAGCACCGCCAAGAACACAAATGGGc      <  1:1788320/96‑1 (MQ=9)
              aggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCt     <  2:2179120/100‑1 (MQ=255)
              aggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCt     <  1:547310/100‑1 (MQ=255)
               gggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTa    >  2:2126190/1‑100 (MQ=255)
                ggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGGAAGTTGGCAGCATCACCGAGAACACAAATGGGCTaa   >  1:1158612/1‑100 (MQ=255)
                 gACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAt  >  1:690388/1‑100 (MQ=255)
                  |                                                                                                  
AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAT  >  NC_000913/279834‑279950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.