New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 279841 | NA (NA) | 20 (0.170) | 9/168 | NT | NA | noncoding (90/768 nt) | IS1 | repeat region |
? | NC_000913 | = 279852 | NA (NA) | noncoding (79/768 nt) | IS1 | repeat region |
AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAT > NC_000913/279834‑279950 | aGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgag < 2:1191387/100‑1 (MQ=11) gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga < 1:898376/100‑1 (MQ=31) gTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgaga > 2:237484/1‑100 (MQ=31) tAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGaa < 1:1983588/100‑1 (MQ=32) agttGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac > 2:2806243/4‑100 (MQ=18) aGCTGAACAGGAGGGACAGCTGATAGAAACTGAAGCTACTGGAACACATCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac < 1:552831/100‑1 (MQ=11) aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCTACTGGAGCACCTCAAACACACCATCATACACTAATTCAGTAAGTTGGCAGCATCACCGAGAac < 1:308760/100‑1 (MQ=255) aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCGTACACTAAATCAGTAAGTTGGCAGCATCACCGAGAac > 2:2323081/1‑100 (MQ=18) aGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCgagatc > 1:874228/1‑98 (MQ=14) gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca > 1:116393/1‑100 (MQ=35) gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca > 2:1638375/1‑100 (MQ=35) gCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAaca > 2:1510514/1‑100 (MQ=35) gAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaa > 2:71094/1‑100 (MQ=38) aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa < 2:3207806/100‑1 (MQ=40) aaCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACaaa < 1:1358548/100‑1 (MQ=40) aCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAAt > 2:2092038/1‑100 (MQ=40) cAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATg > 2:1868208/1‑100 (MQ=255) aggaggGACAGCTGATAGAAACAGAAGCAACTGGATCATCTCAAAAACACCAACATACACTAAATCAGTATGTTGGCAGCATCACCGAGAACACAAATgg > 1:470211/1‑100 (MQ=14) ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg > 2:2281899/1‑100 (MQ=255) ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg < 2:860527/100‑1 (MQ=255) ggaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggg < 2:1340974/100‑1 (MQ=255) gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATggga > 2:1536239/1‑99 (MQ=255) gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGc < 1:639556/100‑1 (MQ=255) gaggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGc < 1:3021223/100‑1 (MQ=255) agtgACAGCTGATAGAAAGAGAAGCGATTGACGTACCAGAAAAACACCATCATGTACTAATTGAGGATGTTGGCAGCACCGCCAAGAACACAAATGGGc < 1:1788320/96‑1 (MQ=9) aggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCt < 2:2179120/100‑1 (MQ=255) aggGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCt < 1:547310/100‑1 (MQ=255) gggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTa > 2:2126190/1‑100 (MQ=255) ggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGGAAGTTGGCAGCATCACCGAGAACACAAATGGGCTaa > 1:1158612/1‑100 (MQ=255) gACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAt > 1:690388/1‑100 (MQ=255) | AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAGAACACAAATGGGCTAAT > NC_000913/279834‑279950 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |