BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	501448 =	NA (NA)	6 (0.050)	5/164	NT	NA	noncoding (5/84 nt)	REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	501478 =	NA (NA)	6 (0.050)	5/164	NT	NA	noncoding (35/84 nt)	REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 167 total aligned reads displayed.

GGCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACC  >  NC_000913/501379‑501577

 gtaaaatatgaaaaatatgtaggcatgataagacgcgccagcgtcgcatcaggcatcgagagccaaatGCCAGATAAGGCGTTCACGCCGCATCTGGCAt                                                                                                    >  1:2674517‑M1/69‑100 (MQ=255)

 gtaaaatatgaaaaatatgtaggcatgataagacgcgccagcgtcgcatcaggcatcgagagccaaatGCCAGATAAGGCGTTCACGCCGCATCTGGCAt                                                                                                    >  2:1799307‑M1/69‑100 (MQ=255)

 gCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAt                                                                                                    >  2:2693732/1‑100 (MQ=255)

   aaaaaaagaaaaatatgtaggcatgataagacgcgccagcgtcgcatcaggcatcgagagccaaatGCCAGATAAGGCGTTCACGCCGCATCTGGCAtt                                                                                                   >  1:2870431‑M1/67‑99 (MQ=255)

     gCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTgg                                                                                                >  2:2514948/1‑100 (MQ=255)

     gCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTg                                                                                                 >  1:1160276/1‑99 (MQ=255)

     aatatgaaaaatatgtaggcatgataagacgcgccagcgtcgcatcaggcatcgagagccaaatGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTgg                                                                                                >  1:3131525‑M1/65‑100 (MQ=255)

      ccGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGc                                                                                               <  2:898422/100‑1 (MQ=255)

      ccGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGc                                                                                               <  2:3123862/100‑1 (MQ=255)

      ccGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCCTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGc                                                                                               >  1:364690/1‑100 (MQ=255)

           gCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTAGCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCg                                                                                          <  2:881944/100‑1 (MQ=255)

           gCGTGAAGACAGCCTGGAAGAGTCGTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGGTAAGGCGTTCACGCCGCATCTGGCATTTGGCtctc                                                                                           <  1:3001176/99‑1 (MQ=255)

            cGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGa                                                                                         >  2:235717/1‑100 (MQ=255)

            cGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGa                                                                                         >  1:3511358/1‑100 (MQ=255)

            cGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGa                                                                                         >  1:1122532/1‑100 (MQ=255)

              tGAAGACAGCCTGGAAGGTTTTTACTTGGTCCGTTAATTTATCGTCTGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCGTTTGGCTCTCGATg                                                                                       <  1:1543198/100‑1 (MQ=25)

              tGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATg                                                                                       >  2:3049285/1‑100 (MQ=255)

               gAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGc                                                                                      >  2:1936329/1‑100 (MQ=255)

                aaGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGcc                                                                                     >  2:2097757/1‑100 (MQ=255)

                aaGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGcc                                                                                     <  2:1786747/100‑1 (MQ=255)

                  gACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTg                                                                                   <  2:1120239/100‑1 (MQ=255)

                  gACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGATATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTg                                                                                   <  1:1861320/100‑1 (MQ=255)

                  gACAGCCTGGAAGAGGCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGTCATTTGGCTCTCGATGCCTg                                                                                   >  1:1734307/1‑100 (MQ=255)

                      gCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGc                                                                               >  2:1983941/1‑100 (MQ=255)

                      gCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGc                                                                               >  2:534856/1‑100 (MQ=255)

                       ccTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCg                                                                              >  1:1986022/1‑100 (MQ=255)

                                      cTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCtt                                                               >  2:1992472/1‑100 (MQ=255)

                                      cTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCtt                                                               <  1:88494/100‑1 (MQ=255)

                                       tGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTa                                                              >  2:3010970/1‑100 (MQ=255)

                                        gggATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTAt                                                             <  1:2580854/100‑1 (MQ=255)

                                        gggATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTAt                                                             <  1:3479809/100‑1 (MQ=255)

                                         ggATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATc                                                            <  2:96633/100‑1 (MQ=255)

                                         ggATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATc                                                            >  2:641755/1‑100 (MQ=255)

                                         ggATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATc                                                            <  2:25503/100‑1 (MQ=255)

                                              gTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                       >  2:561540/1‑100 (MQ=255)

                                              gTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                       >  2:1805124/1‑100 (MQ=255)

                                                tAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa                                                     <  2:952026/100‑1 (MQ=255)

                                                  aGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACa                                                   >  1:614363/1‑100 (MQ=255)

                                                  aGTTATCGTCGGATCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACa                                                   >  2:2335650/1‑100 (MQ=255)

                                                       tcgtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATAttt                                              <  1:788240/100‑1 (MQ=255)

                                                        cgtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATAtttt                                             <  1:3151880/100‑1 (MQ=255)

                                                        cgtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATAtttt                                             <  1:1103791/100‑1 (MQ=255)

                                                         gtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGGCGCTGGCGCGTCTTATCATGCCTACATAttttt                                            >  1:1738319/1‑100 (MQ=255)

                                                         gtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATAttttt                                            >  2:1191094/1‑100 (MQ=255)

                                                         gtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATAttttt                                            >  1:3343653/1‑100 (MQ=255)

                                                         gtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCACATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTCCATAttttt                                            >  1:2329979/1‑100 (MQ=255)

                                                          tcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTc                                           >  2:1534890/1‑100 (MQ=255)

                                                            ggTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCat                                         >  2:2984456/1‑100 (MQ=255)

                                                            ggTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCat                                         >  2:1095675/1‑100 (MQ=255)

                                                            ggTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCat                                         >  2:60578/1‑100 (MQ=255)

                                                            ggTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGACTACATATTTTTCat                                         >  2:3492233/1‑100 (MQ=255)

                                                             gTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCata                                        <  1:108675/100‑1 (MQ=255)

                                                             gTTCGTAGGCCAGATAAGGCGTTCACGCCGCAGCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCata                                        <  2:3038543/100‑1 (MQ=255)

                                                              gccaaatGCCAGATGCGGCGTGAACGCCTTATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCatat                                       <  1:1410696‑M1/93‑1 (MQ=255)

                                                               tCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAtt                                      <  2:2877050/100‑1 (MQ=255)

                                                               tCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAtt                                      <  1:1836855/100‑1 (MQ=255)

                                                               tCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAtt                                      >  2:1898042/1‑100 (MQ=255)

                                                                 gTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATCtttt                                    >  2:3322989/1‑100 (MQ=255)

                                                                 gTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAtttt                                    <  2:1177228/100‑1 (MQ=255)

                                                                 gTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAtttt                                    >  2:773589/1‑100 (MQ=255)

                                                                  tAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCTCGTCTTATCATGCCTACATATTTTTCATATTTTa                                   <  1:2443780/100‑1 (MQ=255)

                                                                  tAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTa                                   <  2:1357400/100‑1 (MQ=255)

                                                                  tAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTa                                   >  1:2805893/1‑100 (MQ=255)

                                                                  aatgccagatgcggcgtgaacgccttatctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCTtttttt                                    >  1:2870431‑M2/34‑99 (MQ=255)

                                                                   atgccagatgcggcgtgaacgccttatctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTAc                                  >  1:2674517‑M2/33‑100 (MQ=255)

                                                                   aGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTAc                                  <  1:2205541/100‑1 (MQ=255)

                                                                    ggCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACa                                 >  2:1427565/1‑100 (MQ=255)

                                                                     GCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACAt                                <  2:1403927‑M1/100‑1 (MQ=255)

                                                                      CCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATc                               <  1:1628417‑M1/100‑1 (MQ=255)

                                                                      CCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATc                               <  2:3512966‑M1/100‑1 (MQ=255)

                                                                       CAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATcc                              <  1:47150‑M1/100‑1 (MQ=255)

                                                                        AGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGTGCGTCTTATCATGTCTACATATTTTTCATATTTTACAtccn                             >  1:3288897‑M1/1‑99 (MQ=255)

                                                                         GATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGTTGCCTGATGCGACGCTGGCTCGTCTTATCATGCCTACATATTTTTCATATTTTAcatcggg                            >  1:1936319‑M1/1‑97 (MQ=255)

                                                                         GATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCgg                            <  1:3215608‑M1/100‑1 (MQ=255)

                                                                           TAAGGCGTTCACGCCGCATCTGGCATTTGTCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCa                          >  1:2976757‑M1/1‑100 (MQ=255)

                                                                           TAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCa                          >  2:1706199‑M1/1‑100 (MQ=255)

                                                                            aaGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGc                           <  1:2541104/98‑1 (MQ=255)

                                                                             aGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAac                        >  1:1458046/1‑100 (MQ=255)

                                                                             aGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAac                        <  2:1430064/100‑1 (MQ=255)

                                                                              ggCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAacc                       >  2:352558/1‑100 (MQ=255)

                                                                              ggCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAacc                       >  2:3184295/1‑100 (MQ=255)

                                                                              ggCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCCTATCATGCCTACATATTTTTCATATTTCACATCCGGCAacc                       >  1:2053749/1‑100 (MQ=255)

                                                                                cGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAaccac                     >  1:325274/1‑100 (MQ=255)

                                                                                cGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAaccac                     <  2:2805910/100‑1 (MQ=255)

                                                                                 gTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAaccacc                    <  1:2262170/100‑1 (MQ=255)

                                                                                   tCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGt                  <  2:387603/100‑1 (MQ=255)

                                                                                    cACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTCTCATGCCTACATATTTTTCATCTTTTACATCCGGCAACCACCGtt                 >  1:379192/1‑100 (MQ=255)

                                                                                      cgccgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTa               >  1:1199188/1‑100 (MQ=255)

                                                                                       gccgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTAc              <  2:2009543/100‑1 (MQ=255)

                                                                                        ccgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTAcc             <  2:529698/100‑1 (MQ=255)

                                                                                        ccgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTAc              >  1:3025564/1‑99 (MQ=255)

                                                                                         cgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTAccc            <  2:2466734/100‑1 (MQ=255)

                                                                                         cgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTAccc            <  1:1783821/100‑1 (MQ=255)

                                                                                         cgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTCCATATTTTACATCCGACAACCACCGTTTAccc            <  1:1970300/100‑1 (MQ=255)

                                                                                           tatctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCg          >  2:3424922‑M2/9‑100 (MQ=255)

                                                                                             tctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTc        >  2:1567199‑M2/7‑100 (MQ=255)

                                                                                             tctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTc        <  2:1060388‑M2/94‑1 (MQ=255)

                                                                                                ggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTcacc     <  2:3443445‑M2/97‑1 (MQ=255)

                                                                                                  cATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTcaccac   <  1:98306‑M2/99‑1 (MQ=255)

                                                                                                   aTTTGGCTCTCGATGCTGGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTGTACATCCGGCAACCACCGTTTACCCCGTCaccacc  <  1:662986/100‑1 (MQ=255)

GGCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACC  >  NC_000913/501379‑501577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.