BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2888334 =	NA (NA)	8 (0.070)	5/164	NT	NA	noncoding (1/37 nt)	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	2888367 =	NA (NA)	8 (0.070)	5/164	NT	NA	noncoding (34/37 nt)	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 162 total aligned reads displayed.

TACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCAC  >  NC_000913/2888268‑2888466

tACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGcc                                                                                                     <  1:3232523/100‑1 (MQ=255)

catcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGcc                                                                                                     >  1:3283342‑M1/67‑100 (MQ=255)

 atcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCt                                                                                                    >  2:127739‑M1/66‑100 (MQ=255)

 atcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCt                                                                                                    >  1:2181966‑M1/66‑100 (MQ=255)

 aCCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCt                                                                                                    >  2:810615/1‑100 (MQ=255)

  tcattcgcccggtgctcgatccggcgcgtgatttgtgggattaaccatcagcccggtcttgtagGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTa                                                                                                   >  1:1624891‑M1/65‑100 (MQ=255)

  ccTTCGGCAGTTCGTTCAGGGCCTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTTTTGCGACGCTCGCGCGTTCTTATCAGGcc                                                                                                     <  1:1007967/98‑1 (MQ=255)

    ttCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACa                                                                                                 <  2:2692491/100‑1 (MQ=255)

    ttCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACa                                                                                                 <  2:1680301/100‑1 (MQ=255)

    ttCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACa                                                                                                 <  1:511419/100‑1 (MQ=255)

    ttCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACa                                                                                                 <  2:131636/100‑1 (MQ=255)

     tCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACaa                                                                                                <  2:3286417/100‑1 (MQ=255)

       ggCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGa                                                                                              >  1:209500/1‑100 (MQ=255)

       ggCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGa                                                                                              >  2:1246107/1‑100 (MQ=255)

        gCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGAc                                                                                             <  2:3451018/100‑1 (MQ=255)

           gttcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGAc                                                                                             >  2:3387686/1‑97 (MQ=255)

           gttcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCgg                                                                                          <  1:2905470/100‑1 (MQ=255)

             tctttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTTTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc                                                                                        <  1:1486489/97‑1 (MQ=255)

             tcgttcAGGGCGTTTAGATCGCGTTTGGACATAGATTCCACACTGTTTGCCGTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc                                                                                        <  1:513790/100‑1 (MQ=255)

             tcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc                                                                                        <  2:950081/100‑1 (MQ=255)

             tcgttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGc                                                                                        <  1:471478/100‑1 (MQ=255)

               gttcAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTg                                                                                      <  1:79981/100‑1 (MQ=255)

                ttcAGGGCGTTTAGATCGAGTATGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGa                                                                                     <  2:3193695/100‑1 (MQ=255)

                  cAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATg                                                                                   <  1:350914/100‑1 (MQ=255)

                  cAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATg                                                                                   <  2:1626599/100‑1 (MQ=255)

                   aGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATgg                                                                                  >  2:146830/1‑100 (MQ=255)

                    gggCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGt                                                                                 <  2:1690158/100‑1 (MQ=255)

                     ggCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGtt                                                                                <  1:3151115/100‑1 (MQ=255)

                     gccGTTTAGATCGAGTTTGGACATATATTCCTCACTGCTTGCCATGCCTGATGCGACGCTCACGCGTTCGTAACAGCCCTCCCAGACCGGGCTGATgg                                                                                  <  1:528970/96‑1 (MQ=255)

                     cgCGTTTAGTTCGAGTTTGGACATAGATCGCTCACTGTTTGCCTTGGCTGAGGCGACGCTCACGCGTTCTTGTCAGGCCTCCAAGACCGGGCTGATGGt                                                                                 <  1:2151957/98‑1 (MQ=255)

                      gCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTa                                                                               <  1:265918/100‑1 (MQ=255)

                       cGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTaa                                                                              >  2:2431402/1‑100 (MQ=255)

                        gTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAAt                                                                             <  1:461345/100‑1 (MQ=255)

                          ttAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATcc                                                                           >  1:1154095/1‑100 (MQ=255)

                           tAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATccc                                                                          <  1:2789237/100‑1 (MQ=255)

                           tAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATccc                                                                          <  2:156813/100‑1 (MQ=255)

                             gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                                                        >  1:386255/1‑100 (MQ=255)

                             gATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcac                                                                        <  2:2078255/100‑1 (MQ=255)

                              aTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcaca                                                                       >  2:1534310/1‑100 (MQ=255)

                              aTCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCcaca                                                                       >  1:295865/1‑100 (MQ=255)

                                  aGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATc                                                                   <  2:3249469/100‑1 (MQ=255)

                                   gTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCa                                                                  <  1:1849127/100‑1 (MQ=255)

                                      cgatcttAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCAcgc                                                               <  2:3546804/94‑1 (MQ=255)

                                        gACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACgcgc                                                             >  1:1502745/1‑100 (MQ=255)

                                         aCATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGcc                                                            <  2:830328/100‑1 (MQ=255)

                                         aCATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGcc                                                            <  1:2058072/100‑1 (MQ=255)

                                               aTTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTTATGGTTAATCCCACAAATCACGCGCCGGATCg                                                      <  2:3371142/100‑1 (MQ=255)

                                               aTTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCg                                                      <  2:695752/100‑1 (MQ=255)

                                                ttCCTCACTGTTTGCGTTGCCTGATGCGACCCTCACGCTTTCTTATCAGGCCTCCAAGACCGGGCCGAGGGTTAATCCCACAAATCACGCGCCg                                                           >  1:2187197/1‑94 (MQ=255)

                                                  ccTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGc                                                   <  2:1720229/100‑1 (MQ=255)

                                                   cTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACACATCACGCGCCGGATCGAGCa                                                  >  1:2943327/1‑100 (MQ=255)

                                                     cACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCAcc                                                <  2:3145272/100‑1 (MQ=255)

                                                     cACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGCCTGATGGTTAATCCCACCAATCACGCGCCGGAGCGaccacc                                                >  1:1128446/1‑100 (MQ=38)

                                                         gTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGc                                            <  1:1187753/100‑1 (MQ=255)

                                                         gTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGc                                            >  2:159280/1‑100 (MQ=255)

                                                         gTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGc                                            >  2:831840/1‑100 (MQ=255)

                                                           ttgccttgccTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGa                                          >  2:742089/1‑100 (MQ=255)

                                                             gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat                                        >  2:599726/1‑100 (MQ=255)

                                                             gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat                                        >  2:3472147/1‑100 (MQ=255)

                                                             gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat                                        >  1:915512/1‑100 (MQ=255)

                                                             gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat                                        >  1:3452977/1‑100 (MQ=255)

                                                             gccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAat                                        <  1:2366002/100‑1 (MQ=255)

                                                              ccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatg                                       >  2:2001957/1‑100 (MQ=255)

                                                              ccttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatg                                       <  1:3377120/100‑1 (MQ=255)

                                                               taggcctgataagaacgcgtgagcgtcgcatcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatga                                      >  1:1624891‑M2/37‑100 (MQ=255)

                                                               cttgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatga                                      <  1:1246100/100‑1 (MQ=255)

                                                                tcGCCTGATGCGACGCTCACGCGTTCTTCTCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatga                                      >  1:250271‑M1/3‑99 (MQ=255)

                                                                 tgcctGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAatgatg                                    <  1:2320089/100‑1 (MQ=255)

                                                                  GCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCTCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGc                                   <  2:1014417‑M1/100‑1 (MQ=255)

                                                                   cctgataagaacgcgtgagcgtcgcatcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGcc                                  >  2:1391804‑M2/33‑100 (MQ=255)

                                                                   CCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGcc                                  <  1:3511329‑M1/100‑1 (MQ=255)

                                                                      GATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGc                               <  2:1987872‑M1/100‑1 (MQ=255)

                                                                       ATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCa                              >  2:295866‑M1/1‑100 (MQ=255)

                                                                       ATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCa                              <  2:3025086‑M1/100‑1 (MQ=255)

                                                                       ATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCa                              <  2:1012350‑M1/100‑1 (MQ=255)

                                                                        TGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCAc                             <  2:3272944‑M1/100‑1 (MQ=255)

                                                                           gACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCcgcacgca                          >  2:1169443/1‑100 (MQ=255)

                                                                               cTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGt                      >  1:1082985/1‑100 (MQ=255)

                                                                               cTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGt                      >  2:2137535/1‑100 (MQ=255)

                                                                                 cACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTaa                    >  2:2021989/1‑100 (MQ=255)

                                                                                   cgcgTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCCCGCGCCCGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAg                  <  1:647861/100‑1 (MQ=255)

                                                                                     cgTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTc                <  2:308572/100‑1 (MQ=255)

                                                                                      gTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTaa                    <  1:2215250/95‑1 (MQ=255)

                                                                                      gTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCg               <  2:2880456/100‑1 (MQ=255)

                                                                                        tCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGcc             <  1:2584825/100‑1 (MQ=255)

                                                                                        tCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGcc             <  1:657194/100‑1 (MQ=255)

                                                                                        tCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGcc             <  1:3031223/100‑1 (MQ=255)

                                                                                         cTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCg            >  2:3050647/1‑100 (MQ=255)

                                                                                          ttATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGa           <  2:1903630/100‑1 (MQ=255)

                                                                                          ttATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGa           <  2:1284948/100‑1 (MQ=255)

                                                                                          ttATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGa           >  2:44353/1‑100 (MQ=255)

                                                                                            atcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAg         <  1:2218922‑M2/93‑1 (MQ=255)

                                                                                            atcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAg         <  1:831836‑M2/93‑1 (MQ=255)

                                                                                            atcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCAGCACGCACCGTACAGTCGCCGAAg         >  1:1567070‑M2/8‑100 (MQ=255)

                                                                                             ncaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGc        >  2:3377090‑M2/7‑100 (MQ=255)

                                                                                              caggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGcc       >  1:2581416‑M2/6‑100 (MQ=255)

                                                                                              caggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGCATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGcc       <  1:1265041‑M2/95‑1 (MQ=255)

                                                                                                 gcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTc    <  1:3283660‑M2/98‑1 (MQ=255)

                                                                                                  cCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGCCGCCGAAGCCTTCa   >  1:2975805‑M2/2‑100 (MQ=255)

                                                                                                   cTACAAGACCGGGCTGATGGTTAATCCCACAAAGCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCAc  <  1:2780961/100‑1 (MQ=255)

TACCTTCGGCAGTTCGTTCAGGGCGTTTAGATCGAGTTTGGACATAGATTCCTCACTGTTTGCCTTGCCTGATGCGACGCTCACGCGTTCTTATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCAC  >  NC_000913/2888268‑2888466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.