New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4325831 =	NA (NA)	23 (0.290)	6/164	NT	30.7%	noncoding (30/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	4326213 =	52 (0.650)					noncoding (412/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences

CCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4325936‑4325831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTG  >  NC_000913/4326213‑4326310                                                                                                                                                                                                              CCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTG                                                                                                          >  2:2277809/1‑100  CTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCCCCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGC                                                                                                         <  1:1744615/100‑1    GATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCT                                                                                                       <  1:1127097/100‑1    GATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCT                                                                                                       >  2:700992/1‑100     ATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTG                                                                                                      >  1:128253/1‑100     ATGCGACGCTTGAGCGTCTTATCAGGCCTACATATTCCCGCACCCTTCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCC                                                                                                        <  1:1400187/98‑1      TGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGA                                                                                                     <  1:320007/100‑1      TGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGA                                                                                                     <  1:319939/100‑1       GCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGAT                                                                                                    >  2:214863/1‑100                          TCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATAAGACGCGCAAGCGTCGCA                                                                                 <  1:1428929/100‑1                             ctCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCGCGAGCGTCGCATCA                                                                              <  1:2400899/98‑1                               CCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCGCGAGCGTCGCATCAag                                                                            >  2:2400871/1‑98                                CTACAAATTTCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGG                                                                            <  1:1405259/99‑1                                CTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACTCGCAAGCGTCGCATCAGGC                                                                           <  1:1468614/100‑1                                CTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGC                                                                           <  1:954254/100‑1                                CTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGC                                                                           <  1:647984/100‑1                                CTACAAATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGC                                                                           <  2:1776625/100‑1                                 TACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCA                                                                          <  1:349742/100‑1                                  ACAAATTCCTGCACCTTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAG                                                                         <  1:811390/100‑1                                  ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG                                                                         <  2:1452006/100‑1                                  ACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAG                                                                         <  1:1959112/100‑1                                   CAACTTCCCGCACCCTCCGTAGGCCGGATAAGGCGTATACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAG                                                                         <  2:2037613/99‑1                                   CAAATTCCCGCACCATCCGTAGGCCGGATAAGTCGTGTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGT                                                                        <  1:2201802/100‑1                                    aactttCCGCACCCTCCGTAGGCCGGATATGGCGTTTACGCCGCATCGGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGT                                                                        <  2:1875498/93‑1                                    AAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGT                                                                        <  1:2234262/99‑1                                     AATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCG                                                                      <  2:132897/100‑1                                     AATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCAACTGCCTGATACGACGCGCGCGCGTCGCATCAGGCcga                                                                        >  2:954243/1‑95                                     AATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCG                                                                      <  1:674144/100‑1                                      ATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGG                                                                     <  1:949084/100‑1                                      ATTCCCGCACCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGG                                                                     <  1:990183/100‑1                                       TTCCCGCTCCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGG                                                                     <  1:1810738/99‑1                                                         GCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCCGACTGCCTGATAAGACGCGCAAGCGTGCCATCAGGCAGTCGGCACCATTGCCGGCTGCGGC                                                  >  2:1259395/1‑100                                                                                        ctcttccgatCTGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGTGC                   <  2:1220268/90‑1                                                                                                    GCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAG       <  1:754952/100‑1                                                                                                    GCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAG       >  2:2189458/1‑100                                                                                                    GCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAG       <  1:591679/100‑1                                                                                                     CCTGATAGGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGG      <  2:1823540/100‑1                                                                                                     CCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGG      <  2:883588/100‑1                                                                                                     CCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGG      <  2:2350472/100‑1                                                                                                       TGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCC    <  2:755120/100‑1                                                                                                       TGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCC    <  1:1107467/100‑1                                                                                                       TGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGCGCGGGAATTTGTAAGC     >  2:1905592/1‑99                                                                                                       TGATAAGACGCGCAAGCGTCCCATCAGGCAGTCGGCACTGTTGCCGGATGCGGTGTAAATGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGG      <  2:1234441/98‑1                                                                                                        GATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT   <  2:461383/100‑1                                                                                                        GATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT   <  1:352708/100‑1                                                                                                        GATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT   >  1:1775634/1‑100                                                                                                        GATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT   <  1:1776646/100‑1                                                                                                        GATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCT   >  1:980782/1‑100                                                                                                         ATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTG  <  2:2086266/100‑1                                                                                                         ATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTG  <  2:1568185/100‑1                                                                                                         ATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTG  >  2:2395488/1‑100                                                                                                         ATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTG  <  1:924514/100‑1                                                                                                          TAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACCGAGGGCGCGGGAAGCTGTAGGCCTG  >  2:1713565/1‑99                                                                                                                                                                                                              CCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4325936‑4325831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTG  >  NC_000913/4326213‑4326310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.