| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4601572 = | 95 (1.100) | 4 (0.050) | 4/162 | NT | 4.6% | intergenic (‑55/+52) | dnaT/yjjB | DNA biosynthesis protein (primosomal protein I)/DUF3815 family inner membrane protein |
| ? | NC_000913 | 4601608 = | 79 (1.000) | intergenic (‑91/+16) | dnaT/yjjB | DNA biosynthesis protein (primosomal protein I)/DUF3815 family inner membrane protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
ATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4601677‑4601572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgtgtgCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTG > NC_000913/4601608‑4601706 ATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGTCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTC < 1:500998/100‑1 TCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCC < 1:185550/100‑1 CGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCG < 2:504464/100‑1 GGTCTTTCCATTCCTGGATTATGGATGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGATACAGCCTCCTCTCCCCCG > 2:775086/1‑99 GTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTG < 2:20865/100‑1 GTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTG < 2:2215410/100‑1 CTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG < 1:1862464/100‑1 GCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGA > 1:532862/1‑98 CTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGTTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAAT > 2:1694365/1‑100 AGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAA > 1:1310504/1‑100 CACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAG > 1:786236/1‑100 CCGTGTGCTTAAGCGAGGCAATTTTATACGCGCGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATG > 2:812892/1‑100 CCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATG > 2:2273030/1‑100 CCGTGTGCTTAAGCGAGGCAATTATATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATG > 2:494886/1‑100 CGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGA > 2:2036408/1‑100 TGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAG < 2:424396/100‑1 GTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGC > 2:1882432/1‑100 GTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAG < 1:479674/99‑1 GCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTG < 1:2171964/100‑1 GCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCAAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTG > 2:861130/1‑100 GCTTAAGCGAGGCAATTTTATACACAAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGAGAACGCACCAACAATCGAAGAAGCTG > 2:669724/1‑100 GCTGAAGCGAGGCAATATTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATCGAAAGACCGCTGGATAACGCACCAACAATCGATGAAGC > 2:228455/1‑98 ATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4601677‑4601572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgtgtgCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTG > NC_000913/4601608‑4601706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |