| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4606558 = | NA (NA) | 5 (0.060) | 4/164 | NT | NA | noncoding (1/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4606590 = | NA (NA) | noncoding (33/92 nt) | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TCGCCGAATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCATCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4606663‑4606558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGC > NC_000913/4606590‑4606688 TCGCCGAATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCA > 2:863148/1‑100TCGCCGAATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCA > 2:635631/1‑100 CGCCGAATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCAT > 1:368894/1‑100 CGCCGAATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCAT > 2:418004/1‑100 CCGAATACCGTGTCTGATGCGGCGTGAACGCCGTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCATCT < 1:1393601/100‑1 GAATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCATCTGG > 1:102469/1‑100 AATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCATCTGGC < 1:863157/100‑1 AGGCCAGATAAGACGCGCCAGCGTCGCATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGTCGTTCACGCCGCATCCGACAAGGTA > 1:612158/1‑100 GCCAGATAAGACGCGCCAGCGTCGCATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATT > 1:1510993/1‑100 GCCAGATAAGACGCGCCAGCGTCGCATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATT > 1:948412/1‑100 AGATAAGACGCGCCAGCGTCGCATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGG > 1:901352/1‑100 GATAAGACGCGCCAGCGTCGCATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATT > 1:1201209/1‑96 gctcttccgATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAAC < 1:1822084/91‑1 GGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTG > 1:877834/1‑100 GGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCAGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTG < 2:1298721/100‑1 GGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGATCGGATAAGACGTTCACGCCGCATCCGACACTGTATTCGACGAGATAATTAACATTTCTTCTCCT > 2:255150/1‑99 CCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGC < 2:1950564/100‑1 CCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGC > 1:1299997/1‑100 CCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTG > 2:820974/1‑98 TCGCCGAATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGACGCGCCAGCGTCGCATCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4606663‑4606558‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGC > NC_000913/4606590‑4606688 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |