New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4606558 =NA (NA)5 (0.060) 4/164 NT NA noncoding (1/92 nt) REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4606590 = NA (NA)noncoding (33/92 nt) REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 123 total aligned reads displayed.

GTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGC  >  NC_000913/4606492‑4606688
                                                                                                  |                                                                                                  
taccttgtcggatgcggcgtgaacgacttatccgacctacaaaacctgcacgttagcccttcgtagGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCt                                                                                                   >  1:612158‑M1/67‑100 (MQ=255)
gtAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCt                                                                                                   <  1:836033/100‑1 (MQ=255)
 tAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTa                                                                                                  <  1:371362/100‑1 (MQ=255)
  aaTTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTAc                                                                                                 <  1:1242033/100‑1 (MQ=255)
  aaTTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTAc                                                                                                 <  1:342033/100‑1 (MQ=255)
  aaTTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTGTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGcc                                                                                                    <  2:2139461/97‑1 (MQ=255)
       cTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAgg                                                                                            >  1:1930892/1‑100 (MQ=255)
       cTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAgg                                                                                            >  1:1676508/1‑100 (MQ=255)
       cTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAgg                                                                                            <  1:2354048/100‑1 (MQ=255)
        tGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAggg                                                                                           >  1:2356341/1‑100 (MQ=255)
        tGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAggg                                                                                           >  2:330256/1‑100 (MQ=255)
        tGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAggg                                                                                           <  1:1497013/100‑1 (MQ=255)
         ggAAAAATGTCCATCAGGAAACTAGCTTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGc                                                                                          <  2:2333332/100‑1 (MQ=255)
         ggAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGc                                                                                          >  2:2300884/1‑100 (MQ=255)
         ggAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGc                                                                                          <  2:416884/100‑1 (MQ=255)
         ggAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGc                                                                                          <  2:632120/100‑1 (MQ=255)
          gAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCt                                                                                         >  2:542225/1‑100 (MQ=255)
          gAAAAATGTCCATCAGGAAACGAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAggg                                                                                           <  2:2225253/98‑1 (MQ=255)
             aaaTGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAAc                                                                                      <  2:1037277/100‑1 (MQ=255)
               aTGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGt                                                                                    <  2:1410373/100‑1 (MQ=255)
                tGTCCATCAGGAAACTAGCGTGCAGGATTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTg                                                                                   >  2:717461/1‑100 (MQ=255)
                 gTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGc                                                                                  <  2:1543616/100‑1 (MQ=255)
                   ccATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAg                                                                                <  1:113682/100‑1 (MQ=255)
                    cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGTGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGACTAACGTGCAgg                                                                               >  2:1427467/1‑100 (MQ=255)
                    cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAgg                                                                               >  2:679506/1‑100 (MQ=255)
                    cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAgg                                                                               <  1:1230600/100‑1 (MQ=255)
                    cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAgg                                                                               <  2:2138726/100‑1 (MQ=255)
                       cAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGtt                                                                             <  2:1676488/99‑1 (MQ=255)
                         ggAAACTAGCGTGCGGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTg                                                                          <  2:1014565/100‑1 (MQ=255)
                         ggAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTg                                                                          >  2:624235/1‑100 (MQ=255)
                         ggAAACTAGCGTGCAGGTTTGGTATGCAGGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTg                                                                          <  1:1468901/100‑1 (MQ=255)
                          gAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGt                                                                         <  1:471204/100‑1 (MQ=255)
                          gAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGt                                                                         <  2:2309157/100‑1 (MQ=255)
                           aaaCTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTa                                                                        <  2:1930870/100‑1 (MQ=255)
                            aaCTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAg                                                                       <  2:1872921/100‑1 (MQ=255)
                              cTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGt                                                                     <  1:1764335/100‑1 (MQ=255)
                                 gCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCgg                                                                  <  2:172461/100‑1 (MQ=255)
                                  cGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGTGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGa                                                                 >  2:351357/1‑100 (MQ=255)
                                  cGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGa                                                                 <  2:773296/100‑1 (MQ=255)
                                   gTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGAt                                                                >  1:1084380/1‑100 (MQ=255)
                                   gTGCACGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGAGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGCTTATGTAGGTcag                                                                  >  2:409085/1‑96 (MQ=25)
                                    tGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATa                                                               >  1:1452457/1‑100 (MQ=255)
                                       aGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAgg                                                            <  1:518704/100‑1 (MQ=255)
                                       aGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAgg                                                            <  1:1648009/100‑1 (MQ=255)
                                        ggTTTTGTATGCATGAGGGGGCAGAGGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGc                                                           <  2:1894866/100‑1 (MQ=255)
                                        ggTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGc                                                           >  1:1230585/1‑100 (MQ=255)
                                         gTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCg                                                          <  1:1825780/100‑1 (MQ=255)
                                          tttGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCCGGTTTTGTAGGTCGGATAAGGCg                                                          >  1:2180408/1‑99 (MQ=255)
                                          tttGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGt                                                         <  1:2119302/100‑1 (MQ=255)
                                           ttGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGtt                                                        <  1:2093119/100‑1 (MQ=255)
                                               tATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGTAGGTTTTGTAGGTCGGATAAGGCGTTCAcg                                                    >  2:1996885/1‑100 (MQ=255)
                                               tATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcg                                                    <  1:1672355/100‑1 (MQ=255)
                                               tATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcg                                                    <  2:736766/100‑1 (MQ=255)
                                                atgcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgc                                                   >  2:1045053/1‑100 (MQ=255)
                                                 tgcatgcGGGGGTAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgcc                                                  <  1:796054/100‑1 (MQ=255)
                                                 tgcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgcc                                                  <  1:1980512/100‑1 (MQ=255)
                                                 tgcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgcc                                                  >  2:1713059/1‑100 (MQ=255)
                                                 tgcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTAGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgcc                                                  >  2:1323814/1‑100 (MQ=255)
                                                  gcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgccg                                                 >  1:2266524/1‑100 (MQ=255)
                                                     tgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCATTAACGCCGCAt                                              >  2:1422049/1‑100 (MQ=255)
                                                         ggggCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa                                          <  2:2313684/100‑1 (MQ=255)
                                                         ggggCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa                                          >  2:1753014/1‑100 (MQ=255)
                                                           ggCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGaca                                        >  2:1417821/1‑100 (MQ=255)
                                                            gCAGATGCCAGGTGCGACGCTGGCGCGTCTTATGTGGCCTTCGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATGCGGTGTGAACGCCTTATCCGagc                                        <  2:433791/99‑3 (MQ=17)
                                                            gCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATGCGGCGTGAACGCCTTATCCGacct                                       <  2:868649/100‑3 (MQ=18)
                                                              agatgccagatgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACgg                                     <  2:1921414/100‑1 (MQ=255)
                                                                atgccagatgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTa                                   >  1:597341/1‑100 (MQ=255)
                                                                 tgccagatgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTAt                                  >  2:2066843/1‑100 (MQ=255)
                                                                 tgccagagtcTACGCTGTCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACgg                                     <  1:2246400/97‑1 (MQ=25)
                                                                  gccagataagacgcgccagcgtcgcatctggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTAtt                                 >  1:1510993‑M2/33‑100 (MQ=255)
                                                                  gccagataagacgcgccagcgtcgcatctggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTAtt                                 >  1:948412‑M2/33‑100 (MQ=255)
                                                                  GCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTAtt                                 <  1:863157‑M1/100‑1 (MQ=255)
                                                                   CCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTc                                >  1:102469‑M1/1‑100 (MQ=255)
                                                                     agataagacgcgccagcgtcgcatctggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCgg                              >  1:901352‑M2/30‑100 (MQ=255)
                                                                     AGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATACGGCGTTCACGCCGCATCAGACACGGTATTCgg                              <  1:1393601‑M1/100‑1 (MQ=255)
                                                                      gataagacgcgccagcgtcgcatctggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTAtt                                 >  1:1201209‑M2/29‑96 (MQ=255)
                                                                       ATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCg                            >  1:368894‑M1/1‑100 (MQ=255)
                                                                       ATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCg                            >  2:418004‑M1/1‑100 (MQ=255)
                                                                        TGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGa                           >  2:863148‑M1/1‑100 (MQ=255)
                                                                        TGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGa                           >  2:635631‑M1/1‑100 (MQ=255)
                                                                          cGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCgaga                         >  2:1217556/1‑100 (MQ=255)
                                                                           gACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGAt                        >  1:104591/1‑100 (MQ=255)
                                                                           gACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGAt                        >  1:2237055/1‑100 (MQ=255)
                                                                             cGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATaa                      >  1:1429497/1‑100 (MQ=255)
                                                                               cTGGCGCGTCTTATCTGGCCTACGAGGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAAtt                    <  1:1786547/100‑1 (MQ=255)
                                                                               cTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAAtt                    >  1:1446634/1‑100 (MQ=255)
                                                                               cTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAAtt                    <  1:679514/100‑1 (MQ=255)
                                                                                tGGCGCGTATTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACTCCGCATCCGACACGGTATTCGGCGAGATAATTa                   <  2:6997/100‑1 (MQ=255)
                                                                                  gctcttccgatctggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAAc                 <  1:1822084‑M2/84‑1 (MQ=255)
                                                                                  gcgcGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAAc                 <  1:1471616/100‑1 (MQ=255)
                                                                                   cgcgTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAAcc                <  1:1638387/100‑1 (MQ=255)
                                                                                     cgTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCtt              <  2:650334/100‑1 (MQ=255)
                                                                                     cgTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCtt              <  2:2350331/100‑1 (MQ=255)
                                                                                        cTTATCTGGCCTACGAAGGGCTAACGTACAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAAACTttct           <  1:2300911/100‑1 (MQ=255)
                                                                                          tATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTttcttc         >  1:1435258/1‑100 (MQ=255)
                                                                                          tATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTttcttc         >  2:1315043/1‑100 (MQ=255)
                                                                                               ggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCAGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTg    <  2:1298721‑M2/97‑1 (MQ=255)
                                                                                               ggcCTACGAAGGGCTAACGTGCAGGTTTTGTAGATCGGATAAGACGTTCACGCCGCATCCGACACTGTATTCGACGAGATAATTAACATTTCTTCTCCt     >  2:255150‑M2/4‑99 (MQ=255)
                                                                                                 cCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTg    >  2:820974‑M2/2‑98 (MQ=255)
                                                                                                 cCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGc  >  1:1299997‑M2/2‑100 (MQ=255)
                                                                                                  |                                                                                                  
GTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATTCGGCGAGATAATTAACCTTTCTTCGCCTGGC  >  NC_000913/4606492‑4606688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.