Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_000913 190,553 Δ14 bp 100% coding (680‑693/726 nt) rpsB → 30S ribosomal subunit protein S2

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1905523 (0.030)65 (0.760) 43/176 NT 96.3% coding (679/726 nt) rpsB 30S ribosomal subunit protein S2
?NC_000913 190567 = 2 (0.020)coding (694/726 nt) rpsB 30S ribosomal subunit protein S2

CGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/190455‑190552
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  NC_000913/190567‑190665
                                                                                                                                                                                                     
CGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCA                                                                                                   <  1:2300918/100‑1
 GGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAG                                                                                                  <  2:2203951/100‑1
   TGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGC                                                                                                <  1:653879/100‑1
   TGTTGACTTCATTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCCGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGC                                                                                                <  2:1580280/100‑1
    GTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCG                                                                                               <  1:1790243/100‑1
    GTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCG                                                                                               <  1:1348991/100‑1
     TTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGG                                                                                              <  1:2007103/100‑1
      TGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTACTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGA                                                                                             >  2:860317/1‑100
         CTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGA                                                                                          >  2:33268/1‑100
         CTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGA                                                                                          <  2:1719496/100‑1
            CGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAG                                                                                       >  1:2212836/1‑100
                 TCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGGTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCG                                                                                  <  2:219732/100‑1
                  CCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGT                                                                                 >  1:2208302/1‑100
                  CCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGT                                                                                 >  1:2193383/1‑100
                  CCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGCGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGT                                                                                 <  1:2021763/100‑1
                   CCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTA                                                                                <  2:1938741/100‑1
                    CGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAG                                                                               <  1:2103174/100‑1
                          ACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTG                                                                         <  2:1710776/100‑1
                           CGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGA                                                                        >  1:2113072/1‑100
                           CGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGA                                                                        >  1:1502461/1‑100
                           CGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGA                                                                        >  1:936273/1‑100
                           CGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTAGTAGAAGCTGA                                                                        >  1:1895762/1‑100
                             ACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGCAGGCCGTTCTCCAGGCGGAAGAAAGCTTAGTAGAAGCTGAtt                                                                      <  1:1621463/100‑3
                              CGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTA                                                                     >  2:1227862/1‑100
                                   CAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAG                                                                >  2:1902496/1‑100
                                   CAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAG                                                                >  1:1640899/1‑100
                                       CCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTT                                                            >  2:1121041/1‑100
                                       CCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTT                                                            >  1:925781/1‑100
                                        CGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTG                                                           <  1:243364/100‑1
                                        CGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTG                                                           <  1:968352/100‑1
                                          TGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGAT                                                         <  2:1764299/100‑1
                                          TGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGGGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTG                                                           <  1:1293328/98‑1
                                          TGCTGTGACCCTGTACCTGGGCGCTGTTGCTGAAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGAT                                                         <  2:107697/100‑1
                                           GCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATA                                                        >  1:435965/1‑100
                                           GCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATA                                                        <  2:1216399/100‑1
                                              GTGACCCTGTACCTGGGCGCTGTTGCTGCAACAGTACGTGAAGTCAGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACT                                                     <  2:1999924/100‑1
                                               TGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTC                                                    <  1:1427171/100‑1
                                                 ACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCC                                                  >  2:2128948/1‑100
                                                  CCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCC                                                 >  1:1924200/1‑100
                                                  CCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAAGCTTGATAACTCCac                                                 >  2:203695/1‑98
                                                       TACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAA                                            <  1:1312653/100‑1
                                                        ACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAAT                                           >  1:1478857/1‑100
                                                          CTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAG                                         >  2:1496826/1‑100
                                                          CTGGGCGCTGTTGCTGCAACCGTACGTGAAGACCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCACCCAAAATAG                                         >  1:1221311/1‑100
                                                             GGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTC                                      >  1:1729131/1‑100
                                                             GGCGCTGTTGCTGCAACCGTACGTGAAGACCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTC                                      >  1:2091814/1‑100
                                                                 CTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAG                                   >  2:2118123/1‑99
                                                                 CTGTTGCTGCAACCGTACGTGAAGGACGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGT                                  >  2:1486833/1‑100
                                                                    TTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGTTATCTTTTCCAAAATAGTTCGAGTTGa                               <  2:988270/100‑2
                                                                    TTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGC                               <  2:964189/100‑1
                                                                     TGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTG                                >  2:600425/1‑98
                                                                        TGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAA                           >  1:492031/1‑100
                                                                        TGCAACCATACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAA                           >  2:519417/1‑100
                                                                         GCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAA                          >  2:1659872/1‑100
                                                                          CAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAG                         >  1:1142304/1‑100
                                                                            ACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGC                       >  2:1464413/1‑100
                                                                              CGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGG                     <  2:91306/100‑1
                                                                               GTACGTGAAGGCCGTTCGCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGG                     <  1:196471/99‑1
                                                                                   GTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGC                >  2:523619/1‑100
                                                                                    TGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCT               >  1:49433/1‑100
                                                                                        GGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAG           >  1:906949/1‑100
                                                                                        GGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAG           <  1:337448/100‑1
                                                                                        GGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAG           >  1:1716891/1‑100
                                                                                        GGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAG           <  2:507301/100‑1
                                                                                        GGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGA            >  1:37419/1‑99
                                                                                         GCCGTTCTCCAGGCGGAAGAAATTTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATTGTTCGTGTTGCAGAAAGGCGGCAAGCTCG             <  2:2182094/97‑1
                                                                                         GCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGA          <  1:1283071/100‑1
                                                                                         GCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGA          <  1:1170669/100‑1
                                                                                           CGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAAT        >  2:1599821/1‑100
                                                                                             TTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTC      <  2:1757848/100‑1
                                                                                               CTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCC    >  2:1348441/1‑100
                                                                                                TCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCG   >  2:533832/1‑100
                                                                                                 CCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  1:1270580/1‑100
                                                                                                 CCAGGCGGAAGAAAACTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAATTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCG   >  2:1092010/1‑99
                                                                                                                                                                                                     
CGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/190455‑190552
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  NC_000913/190567‑190665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.