New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1180420	NA (NA)	4 (0.050)	3/166	NT	NA	noncoding (67/96 nt)	RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 1180448	NA (NA)					noncoding (95/96 nt)	RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

TGCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1180325‑1180420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGCAATGCTTC  <  NC_000913/1180448‑1180346                                                                                                                                                                                                         TGCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGACGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAGTTGAATTTGCGGGTTTTGTGGGCCG                                                                                                      <  2:1046670/99‑1  GCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGG                                                                                                     <  1:582387/99‑1  GCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGG                                                                                                     <  2:1880329/99‑1                            atctCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATGGGGCGCGAACGCCTTATCCGGCCC                                                                          <  2:1109614/96‑1                            TTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATGGGGCGCGAACGCCTTATCCGGCCC                                                                          <  1:1445957/100‑1                             TGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATGGGGCGCGAACGCCTTATCCGGCCCA                                                                         <  1:1438422/100‑1                                CTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATGGGGCGCGAACGCCTTATCCGGCCCAgat                                                                      >  1:1109624/1‑97                                                                                                    GATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGCAATGCTTC  <  2:2318041/100‑1                                                                                                                                                                                                         TGCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1180325‑1180420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGATGGGGCGCGAACGCCTTATCCGGCCCACAAAACCCGCAAATTCAATTAATTGCGTCCCCTTGCAGGCCTGATAAGCGTAGTGCATCAGGCAATGCTTC  <  NC_000913/1180448‑1180346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.