| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1180420 | NA (NA) | 4 (0.050) | 3/166 | NT | NA | noncoding (67/96 nt) | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 1180448 | NA (NA) | noncoding (95/96 nt) | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TGCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTAC > NC_000913/1180325‑1180519 | tGCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGACGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAGTTGAATTTGCGGGTTTTGTGGGccg < 2:1046670‑M1/99‑4 (MQ=255) gCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGccgg < 2:1880329‑M1/99‑5 (MQ=255) gCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGccgg < 1:582387‑M1/99‑5 (MQ=255) gAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATaa > 2:691771/1‑100 (MQ=255) ggATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCg < 1:2309565/100‑1 (MQ=255) gATTAAGAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGt < 1:287280/100‑1 (MQ=255) gATTAAAAGCGGGAAGCTTTGCTTGATGTGTTACGCTTATCAGGTCTGGAAGTGGACGAAATTATTTGATTTTGATTGTTTTGTGGGGAGGAAAAGGAGt < 2:805425/100‑1 (MQ=255) gATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGt > 1:732567/1‑100 (MQ=255) ttAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTc < 2:1908780/100‑1 (MQ=255) aaaGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAAATAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTcgcg > 2:2185561/1‑100 (MQ=255) aGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGcc > 1:2265749/1‑100 (MQ=255) gAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATC < 2:2318041‑M2/100‑1 (MQ=255) ttGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGccggatggggcgcgaacgccttatccggccc < 1:1445957‑M1/100‑32 (MQ=255) ttGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGaat < 1:2254915/100‑1 (MQ=255) atctctgatGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGccggatggggcgcgaacgccttatccggccc < 2:1109614‑M1/96‑32 (MQ=255) tGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGccggatggggcgcgaacgccttatccggccca < 1:1438422‑M1/100‑33 (MQ=255) gCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGaataa < 1:1094390/100‑1 (MQ=255) gCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGaataa < 2:1732485/100‑1 (MQ=255) ccTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGaataat < 1:1779271/100‑1 (MQ=255) cTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGccggatggggcgcgaacgccttatccggcccagat > 1:1109624‑M1/1‑65 (MQ=255) gATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATaca > 2:1232763/1‑100 (MQ=255) gATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATaca > 2:1153064/1‑100 (MQ=255) cACTACGCTTATCAGGCCTGCAAGAGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACAcgc > 2:154233/1‑99 (MQ=255) cTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCa < 1:121980/100‑1 (MQ=255) tACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCa < 1:361674/99‑1 (MQ=255) aCGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCAc > 1:830057/1‑99 (MQ=255) gCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACt < 1:1978352/98‑1 (MQ=255) cAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGc > 2:537533/1‑100 (MQ=255) aGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGcc > 1:1172225/1‑100 (MQ=255) aGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGcc < 1:2043791/100‑1 (MQ=255) aGGCCTGCAAGGGGACGCAATTAATTGAATTTGCAGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGc < 1:2352194/99‑1 (MQ=255) tGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCTCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCtt > 2:656729/1‑99 (MQ=255) aaGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTAt > 1:1663177/1‑100 (MQ=255) aGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCCGCCTCTTTTATc > 2:1223329/1‑100 (MQ=255) ggggCCGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCg > 2:1560999/1‑100 (MQ=255) ggggACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCg < 2:1954646/100‑1 (MQ=255) gACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGttt < 1:1347766/100‑1 (MQ=255) cGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTAc < 1:1442867/100‑1 (MQ=255) cGCAATTAATTGAATTTGCGGGTTTTGTGGGCCCGATAAGGTGTTCGCGCCCTATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCg < 2:1971656/95‑1 (MQ=255) gCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCCTTTATCGTTTACt < 1:1629907/100‑1 (MQ=255) attGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAAt > 2:1110982/1‑100 (MQ=255) ttGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATa < 2:1014469/100‑1 (MQ=255) ttGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATa < 1:537536/100‑1 (MQ=255) gAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAAc > 1:1075224/1‑100 (MQ=255) ttGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATg < 2:2292725/100‑1 (MQ=255) tGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATgn < 1:2087531/100‑2 (MQ=255) cGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTTATCAATAACaa > 1:625858/1‑95 (MQ=255) cGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCgg < 2:845003/100‑1 (MQ=255) cGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCgg > 2:520891/1‑100 (MQ=255) gggTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGc < 1:1232776/100‑1 (MQ=255) atctgggcCGGATAAGGCGTTCGCGCCCCATCCGGcccacaaaacccgcaaattcaattaattgcgtccccttgcaggcctgataagcgtagtgcatcag > 1:1109624‑M2/4‑35 (MQ=255) tgtaGGCCGGATAAGGCGTTTACGCCGCATCCGGcctacaaattctgcaaattcaacaaattgcgaatcccttgtaggcctgataagcgtagcgcatca > 1:784934‑M1/1‑34 (MQ=255) gtgGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATaaan < 2:1011031/100‑2 (MQ=255) tgGGCCGGATAAGGCGTTCGCGCCCCATCCGGcccacaaaacccgcaaattcaattaattgcgtccccttgcaggcctgataagcgtagtgcatcaggca < 1:1438422‑M2/100‑69 (MQ=255) tgGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACg > 2:1210202/1‑100 (MQ=255) tgGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACg < 1:910954/100‑1 (MQ=255) tgGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACg < 1:359409/100‑1 (MQ=255) gggCCGGATAAGGCGTTCGCGCCCCATCCGGcccacaaaacccgcaaattcaattaattgcgtccccttgcaggcctgataagcgtagtgcatcaggcaa < 1:1445957‑M2/100‑70 (MQ=255) gggCCGGATAAGGCGTTCGCGCCCCATCCGGcccacaaaacccgcaaattcaattaattgcgtccccttgcaggcctgataagcgtagtgcatcagagat < 2:1109614‑M2/100‑70 (MQ=255) gggCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGt > 1:188958/1‑100 (MQ=255) ggCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTa > 1:766422/1‑100 (MQ=255) ggCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTa > 2:2385915/1‑100 (MQ=255) gCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGCCAATAACAACGCCGCAATAAACGTAc > 2:973905/1‑100 (MQ=255) | TGCTGAAGGGATTAAAAGCGGGAAGCATTGCCTGATGCACTACGCTTATCAGGCCTGCAAGGGGACGCAATTAATTGAATTTGCGGGTTTTGTGGGCCGGATAAGGCGTTCGCGCCCCATCCGGAATAATACACGCGCACTTTTCCGGCCTCTTTTATCGTTTACTCGTCAATAACAATGCGGCAATAAACGTAC > NC_000913/1180325‑1180519 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |