New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2731304 =	31 (0.360)	14 (0.170)	5/166	NT	32.6%	intergenic (‑147/+296)	rrsG/clpB	16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
	?	NC_000913	= 4035360	NA (NA)					intergenic (+207/‑171)	hemG/rrsA	protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

GGTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2731407‑2731304 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG  <  NC_000913/4035360‑4035263                                                                                                                                                                                                            GGTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAG                                                                                                        >  1:915384/1‑100    TCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCG                                                                                                      >  1:2069182/1‑99     CTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC                                                                                                    <  2:432759/100‑1                                                                           CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAG                                 >  1:1481427/1‑97                                                                           CCCCGCGCCGCTGAGAAAAAAAGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTTCTTTCTCTTCCAGAGT                                >  2:823345/1‑98                                                                             tctCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTC                            <  2:773007/97‑1                                                                             CCGCGCCGCTGAGAAAAAGCGACGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTATCTGCCGaaaatct                             >  1:1820980/1‑92                                                                             CCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTC                            >  1:531472/1‑100                                                                             CCGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTACCGAAGTTCTC                            >  1:947378/1‑100                                                                             CCGCGCCGCTGAGAAAAAGCGAAGCGGCACGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTA‑TTTTGCTTTCTCTGCCGGAGTTCTCA                           >  2:144798/1‑100                                                                             CCGCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTC                            >  1:2111716/1‑100                                                                              CGCGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTC                            >  1:1155245/1‑99                                                                              CGCGCCGCTGAGAAAAAGCGAA‑‑‑‑‑GCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGA                      >  1:1507754/1‑100                                                                               GCGCCGCTGAGAAAAAGCAAAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAG                          >  1:1529087/1‑100                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGa                         >  1:773016/1‑99                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGG                         >  1:399298/1‑100                                                                                CGCCGCTGAGAAAAAGCGAAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAG                          >  2:1448785/1‑99                                                                                           tttttctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCCTGAGAACTCCGgc              <  1:1830290/92‑3                                                                                                   AGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGC      <  2:656628/100‑1                                                                                                    GCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGATCCCCGCTGACCCGGCG     >  2:1403563/1‑100                                                                                                     CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG    <  2:1173990/100‑1                                                                                                     CGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGG    <  1:2140856/100‑1                                                                                                      GGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGC   <  2:420436/100‑1                                                                                                       GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG  >  2:129508/1‑100                                                                                                       GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG  <  2:2071230/100‑1                                                                                                       GCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG  <  1:2394040/100‑1                                                                                                                                                                                                            GGTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2731407‑2731304 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggcGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACCCCGCTGACCCGGCGGCG  <  NC_000913/4035360‑4035263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.