| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2731304 = | 31 (0.360) | 14 (0.170) | 5/166 | NT | 32.6% | intergenic (‑147/+296) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| ? | NC_000913 | = 4035360 | NA (NA) | intergenic (+207/‑171) | hemG/rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon | |||||
ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG > NC_000913/2731206‑2731403 | cgccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgc > 2:129508‑M1/99‑100 (MQ=255)cgccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgc < 1:2394040‑M1/2‑1 (MQ=255)cgccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgc < 2:2071230‑M1/2‑1 (MQ=255) gccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgcc < 2:420436‑M1/3‑1 (MQ=255) ccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgccg < 2:1173990‑M1/4‑1 (MQ=255) ccgccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgccg < 1:2140856‑M1/4‑1 (MQ=255) cgccgggtcagcggggatctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgccgc > 2:1403563‑M1/96‑100 (MQ=255) gccgggtcagcggggttctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCcgct < 2:656628‑M1/6‑1 (MQ=255) gccggagttctcaggagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcgccgctgagaaaaa < 1:1830290‑M1/14‑9 (MQ=255) tctcctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgc‑‑‑‑‑TTCGCTTTTTCTCAGCGGcgcg > 1:1507754‑M1/79‑100 (MQ=255) tctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAgcggcg > 1:773016‑M1/76‑100 (MQ=255) cctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAgcggcg > 1:399298‑M1/76‑100 (MQ=255) ctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAgcggcg > 2:1448785‑M1/75‑99 (MQ=255) ctgagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGgcgc > 1:1529087‑M1/75‑100 (MQ=255) tgagaactccggcagagaaagcaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgtGCCGCTTCGCTTTTTCTCAGCGGCGCgg > 2:144798‑M1/73‑100 (MQ=255) gagaacttcggtagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGCGCgg > 1:947378‑M1/73‑100 (MQ=255) gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCtcagcggcgaga < 2:773007‑M1/28‑4 (MQ=255) gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGcgcg > 1:1155245‑M1/73‑99 (MQ=255) gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCGCTTTTTCTCAGCGGCGCgg > 1:531472‑M1/73‑100 (MQ=255) gagaactccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGGCGCgg > 1:2111716‑M1/73‑100 (MQ=255) agattttcggcagataaagcaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCGTCGCTTTTTCTCAGCGGCGCgg > 1:1820980‑M1/72‑99 (MQ=255) actctggaagagaaagaaaaaataaatgcttgactctgtagcgggaaggcgtattatgcacaccccgcGCCGCTTCTTTTTTTCTCAGCGGCGCgggg > 2:823345‑M1/69‑98 (MQ=255) ctccggcagagaaagcaaaaataaatgcttgactctgtagcgggaaagcgtattatgcacaccccgcGCCGCTTTGCTTTTTCTCAGCGGCGCgggg > 1:1481427‑M1/68‑97 (MQ=255) tatgAATCCGTATCTTAGAGTGCACACACAGATTGTATAATAAATAGTTAAAGAGCAGTGCCGCTTCAATTTTTCTCAGCGGCGCGGGGTTGGCataata > 2:866326/4‑100 (MQ=1) aGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTc < 2:2053666/100‑1 (MQ=11) aGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTc < 1:1595324/100‑1 (MQ=11) tGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTg > 1:1173100/1‑100 (MQ=33) tGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTg < 1:2042463/100‑1 (MQ=33) gTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGc < 1:792168/100‑1 (MQ=35) tCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCt < 2:704803/100‑1 (MQ=35) cTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCTCGGGGTGTGCATAATACGCCTTCCCACTACAGAGTCAAGCATTTCttt > 2:131391/1‑96 (MQ=12) cTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt < 1:500742/100‑1 (MQ=38) cTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt > 1:136493/1‑100 (MQ=38) cTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtt > 1:700629/1‑100 (MQ=38) cTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCt > 2:2212718/1‑99 (MQ=35) tGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTTTTTTTTTTTTTAAGTGTGCATAATACGCCTACCCGCTACAGAGTCAAGCATTTCTTTGCttt > 2:85081/1‑100 (MQ=9) tGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCttt < 1:673986/100‑1 (MQ=40) gATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt < 2:2327571/100‑1 (MQ=40) aaaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc < 2:2236341/100‑1 (MQ=255) aaaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc > 2:2183592/1‑100 (MQ=255) aaaGTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc < 2:2236598/100‑1 (MQ=255) aaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGGATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct > 2:2002733/1‑100 (MQ=255) atggTTAAAGTGCAGTGCTGCTTCGTTTTGTATCAGCGGCGCGGGGTGTGCATATTACGCCATCCGGCTAGATTGTTGTGCATTGCTTTGTTTTtatc < 2:637187/95‑1 (MQ=2) aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg < 1:1476740/100‑1 (MQ=255) ttGTTCAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCTCTACAGAGTCAAGTATTTCTTTGCTTTtctc < 2:2152436/97‑1 (MQ=255) tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt < 1:1478961/100‑1 (MQ=255) gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg > 2:617026/1‑100 (MQ=255) gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg < 2:64236/100‑1 (MQ=255) gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg < 2:1128445/100‑1 (MQ=255) gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTg > 2:1113012/1‑100 (MQ=255) tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgag > 1:45875/1‑100 (MQ=255) aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt > 1:1120725/1‑100 (MQ=255) agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAtt < 2:745392/100‑1 (MQ=255) gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc > 2:257323/1‑100 (MQ=255) gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc < 2:2062617/100‑1 (MQ=255) gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc > 2:1223895/1‑100 (MQ=255) aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg > 1:2069764/1‑100 (MQ=255) aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg < 2:1134603/100‑1 (MQ=255) gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg < 2:1086667/100‑1 (MQ=255) gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg < 1:1469568/99‑1 (MQ=255) GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag < 2:432759‑M1/100‑1 (MQ=255) | ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG > NC_000913/2731206‑2731403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |