New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3943543	NA (NA)	8 (0.110)	3/156	NT	100%	intergenic (+33/‑161)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA of rrnC operon
	?	NC_000913	= 3943583	0 (0.000)					intergenic (+73/‑121)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA of rrnC operon

GGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTG  >  NC_000913/3943474‑3943639                                                                      |                                                                                                 ggcggTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGT                                                                    <  1:1276778‑M2/100‑1 (MQ=255) ggcggTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGT                                                                    <  2:1288433‑M2/100‑1 (MQ=255)  gcggTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGCGTGATGT                                                                    <  2:1155145‑M2/99‑1 (MQ=255)   cggTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTT                                                                  <  1:600303‑M2/100‑1 (MQ=255)   cggTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTT                                                                  <  2:1708487‑M2/100‑1 (MQ=255)    ggTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTG                                                                 >  1:1438908‑M2/1‑100 (MQ=255)     gTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA                                                                >  1:1933048‑M2/1‑100 (MQ=255)     gTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA                                                                >  2:503197‑M2/1‑100 (MQ=255)     gTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA                                                                >  2:427621‑M2/1‑100 (MQ=255)     gTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTG                                                                 <  2:741318‑M2/99‑1 (MQ=255)      tAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG                                                               >  1:2368966‑M2/1‑100 (MQ=255)      tAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG                                                               >  1:300649‑M2/1‑100 (MQ=255)      tAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG                                                               <  1:34222‑M2/100‑1 (MQ=255)       aaCAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGA                                                              >  1:1708507‑M2/1‑100 (MQ=255)       aaCAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGA                                                              >  1:1028792‑M2/1‑100 (MQ=255)       aaCAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGA                                                              <  1:1853634‑M2/100‑1 (MQ=255)         cAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA                                                            <  2:9694‑M2/100‑1 (MQ=255)         cAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA                                                            <  2:1046578‑M2/100‑1 (MQ=255)         cAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA                                                            <  1:2051851‑M2/100‑1 (MQ=255)           ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT                                                          <  2:1053836‑M2/100‑1 (MQ=255)           ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT                                                          >  2:2196257‑M2/1‑100 (MQ=255)           ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT                                                          <  1:567656‑M2/100‑1 (MQ=255)                                                  tgagtgaAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgt                   <  1:932589‑M2/100‑40 (MQ=255)                                                                 tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTacggcaggtgactttcactcacaacccagcaagtggcgtcccctaggggattc     <  1:914427‑M2/99‑54 (MQ=255)                                                                 tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcg    <  2:2071665‑M2/100‑55 (MQ=255)                                                                  acctTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcga   <  1:1725716‑M2/99‑56 (MQ=255)                                                                   ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa  <  1:817780‑M2/100‑57 (MQ=255)                                                                   ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa  <  1:1817847‑M2/100‑57 (MQ=255)                                                                      |                                                                                                 GGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTG  >  NC_000913/3943474‑3943639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.