| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943543 | NA (NA) | 8 (0.110) | 3/156 | NT | 100% | intergenic (+33/‑161) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943583 | 0 (0.000) | intergenic (+73/‑121) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
GGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA > NC_000913/3943484‑3943682 | ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT > 2:2196257‑M2/1‑100 (MQ=255)ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 2:1053836‑M2/100‑1 (MQ=255)ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:567656‑M2/100‑1 (MQ=255) tgagtgaAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgt < 1:932589‑M2/100‑40 (MQ=255) tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTacggcaggtgactttcactcacaacccagcaagtggcgtcccctaggggattc < 1:914427‑M2/99‑54 (MQ=255) tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcg < 2:2071665‑M2/100‑55 (MQ=255) acctTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 1:1725716‑M2/99‑56 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 1:817780‑M2/100‑57 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 1:1817847‑M2/100‑57 (MQ=255) atCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgt < 2:1526586‑M2/100‑64 (MQ=255) atCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgt < 2:594123‑M2/100‑64 (MQ=255) nttgAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg < 2:2362104‑M2/99‑90 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 1:769803‑M2/1‑10 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg < 2:1936111‑M2/100‑91 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg < 2:1748880‑M2/100‑91 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 1:1175928‑M2/1‑10 (MQ=255) tagagataTTaagacaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg < 1:1625212‑M2/98‑91 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcatcccctaggggattcgaacccctgttaacgccgcgaaaggccggtgtcct < 1:2367244‑M2/97‑89 (MQ=255) gagaTATTaaggcaggtgactttcactcgcaaaccagcaagaggcgtccactaggggattccaacccctgttaccgccgtgaaagggcggtgtcctgg < 2:2033608‑M2/98‑91 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc < 1:1337232‑M2/100‑93 (MQ=255) agaTATTaatgcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 1:707241‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctatgggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 1:1912423‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 1:2184517‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:1222482‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:1544474‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc < 1:519527‑M2/100‑94 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:932578‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctggtaccgccgtgaaagggcggtgcc < 2:2288249‑M2/93‑87 (MQ=255) gaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgagcccctgttaccgccgtgaaagggcggtgtcctgggc > 2:885141‑M2/1‑6 (MQ=255) gaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcct < 2:519821‑M2/100‑95 (MQ=255) atatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctc < 1:524783‑M2/100‑96 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 2:56534‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct > 1:1313993‑M2/1‑4 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 1:401025‑M2/100‑97 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcn > 2:966626‑M2/1‑4 (MQ=255) atTaaggcaggtgactttcactcagaaaccagcaagtggcgtcccctaggggattcgatcccctgttaccgtcgtgaaagggcggtgtcctgggcctcta > 2:1891783‑M2/1‑3 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta > 2:1779148‑M2/1‑3 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta < 2:161784‑M2/100‑98 (MQ=255) ttaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctag > 1:145849‑M2/1‑2 (MQ=255) ttaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctag > 1:1398784‑M2/1‑2 (MQ=255) taaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctaga < 2:1609690‑M2/100‑100 (MQ=255) | GGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA > NC_000913/3943484‑3943682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |