| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320762 | 55 (0.640) | 10 (0.120) | 8/166 | NT | 16.0% | coding (720/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC |
| ? | NC_000913 | = 2320771 | 54 (0.670) | coding (729/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC | |||||
CTCCCGTCGCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGCTGCCGATGGCGTCATT > NC_000913/2320672‑2320870 | ctcCCGTCGCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATg > 2:1543671/1‑100 (MQ=255)ctcCCGTCGCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATg > 2:533026/1‑100 (MQ=255) tCCCGTCGCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGg > 2:2076125‑M2/1‑99 (MQ=255) cccGTCGCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGgg < 1:906727‑M2/100‑3 (MQ=255) cccGTCGCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCCGGCACAAAATATTCCCACTCGATTACCAAAATTAACCGGTGAAATg > 1:299311/1‑98 (MQ=255) tCGCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGgggc > 1:1887266‑M2/1‑94 (MQ=255) gCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAAt < 1:638327/100‑1 (MQ=255) ccTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAAtc < 1:354433/100‑1 (MQ=255) cgcCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAAtcagtcag > 1:1876968/1‑100 (MQ=255) cgcCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATAGGGCAAAtcagaca > 1:150620/1‑99 (MQ=255) cgcCAATATTGATATCATCACAGATAGCCTATCGACTATGGCACAAAATATTCCCACTCGATTACCACAATTGCCAGGTGAAATGGGGCAAAtcagacaa > 2:453976/1‑99 (MQ=255) ccAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCagag > 2:1166454/1‑100 (MQ=255) atatTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAgtgt < 1:2119540/100‑1 (MQ=255) atTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTta < 2:670200/100‑1 (MQ=255) ttGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTtaa < 2:356849/100‑1 (MQ=255) tGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTtaat < 1:596928/100‑1 (MQ=255) gATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTtaata < 1:875020/100‑1 (MQ=255) gATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTtaata < 1:2094060/100‑1 (MQ=255) gATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTtaata > 1:1633507/1‑100 (MQ=255) catcaCCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCt > 1:2201892/1‑99 (MQ=255) catcaCCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTc > 1:2067804/1‑100 (MQ=255) tcaCCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGc > 2:590136/1‑100 (MQ=255) aCCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGccc < 2:1958703/100‑1 (MQ=255) gATTGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGTCAAATCAGTCAGATTGTTAATAACCTCGCCCAgg < 2:1932076/100‑1 (MQ=255) tGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCa > 1:631881/1‑100 (MQ=255) ggCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGGGAAATGGGGCCAATCAGCCAGAGCGTTAATAACCTCGCCCAGGCAc > 1:1735264/1‑100 (MQ=255) tctcGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCg < 2:1358553/100‑1 (MQ=255) ctcGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGt > 1:1176179/1‑100 (MQ=255) ctcGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCACAGGCACTGCGt > 2:1790758/1‑100 (MQ=255) tcGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTg < 1:1540138/100‑1 (MQ=255) cGACTCTGGCACAAAAGATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGa < 1:433680/100‑1 (MQ=255) gACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGaa < 1:742780/100‑1 (MQ=255) ctGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAAcgc > 1:1836991/1‑100 (MQ=255) ggCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCgg < 1:934928/100‑1 (MQ=255) ggCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCgg < 1:533029/100‑1 (MQ=255) ggCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCgg < 1:1633675/100‑1 (MQ=255) ggCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCgg < 2:2303189/100‑1 (MQ=255) gCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCgg < 1:1819915/99‑1 (MQ=255) caAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGacac > 1:704597/1‑100 (MQ=255) caAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGacac > 2:2075748/1‑100 (MQ=255) aaaTATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACtt > 2:461990/1‑100 (MQ=255) atTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACg < 1:493263/100‑1 (MQ=255) atTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACg > 1:381219/1‑100 (MQ=255) ccACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCt < 2:2234612/100‑1 (MQ=255) cACTCGATTACCACAATTGCCCGTCGAAATGGGGCAAATCAGTCAGAGTATTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTg > 2:645477/1‑100 (MQ=255) cACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAAAGATCTg > 1:1077584/1‑100 (MQ=255) aCTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGa > 2:1734701/1‑100 (MQ=255) tCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGatt < 1:1234967/100‑1 (MQ=255) cGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGatta > 2:1943263/1‑100 (MQ=255) cGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGatta > 2:1702389/1‑100 (MQ=255) gATTACCACAATTGCCCGGTGAAATGgggcaattgtggtaatcgagtgggaatattttgtgccagagtcgagaggccatcggtgatgatataaata < 1:328486‑M2/96‑71 (MQ=255) aTTACCACAATTGCCCGGTGAAATGgggcaattgtggtaatagagtgggaatattttgtgccagagtcgagaggccataggtgatgatatcaatattggc < 2:424286‑M2/100‑76 (MQ=255) ttACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTg < 2:449211/100‑1 (MQ=255) ttACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTg < 2:150617/100‑1 (MQ=255) tACCACAATTGCCCGGTGAAATGgggcaattgtggtaatcgagtgggaatattttgtgccagagtcgagaggccatcggtgatgatatcaatattggcgc < 2:978585‑M2/100‑78 (MQ=255) tACCACAATTGCCCGGTGAAATGgggcaattgtggtaatcgagtgggaatattttgtgccagagtcgagaggccatcggtgatgatatcaatattggcg < 2:1616298‑M2/99‑77 (MQ=255) aCCACAATTGCCCGGTGAAATGgggcaattgtggtaatcgagtgggaatattttgtgccagagtcgagaggccatcggtgatgatatcaatattggcgct < 1:1037262‑M2/100‑79 (MQ=255) aCCACAATTGCCCGGTGAAATGgggcaattgtggtaatcgagtgggaatattttgtgccagagtcgagaggccatcggtgatgatatcaatattggcgct < 1:1038852‑M2/100‑79 (MQ=255) ccACAATTGCCCGGTGAAATGgggcaattgtggtaatcgagtgggaatattttgtgccagagtcgagaggccatcggtgatgatatcaatattggcgctc < 1:884215‑M2/100‑80 (MQ=255) ccACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGaaa < 2:714529/100‑1 (MQ=255) ccACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGaaa > 1:1784666/1‑100 (MQ=255) ccACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGaaa < 1:2186609/100‑1 (MQ=255) acaATTGCCCGGTGAAATGgggcaattgtggtaatcgagtgggaatattttgtgccagagtcgagaggccatcggtgatgatatcaatattggcgctcag < 2:1646680‑M2/100‑82 (MQ=255) caATTGCCCGGTGAAATGgggcaattgtggtaatcgagtgggaatattttgtgccagagtcgagaggccatcggtgatgatatcaatattggcgctcagg < 1:1063288‑M2/100‑83 (MQ=255) caATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACg < 1:2180543/100‑1 (MQ=255) aaTTGCCCGGTGAAATGgggcaattgtggtaatcgagtaggaatattttgtgccagagtcgagaggccataggtgatgatatcaatattggcgctcag < 2:1469812‑M2/98‑82 (MQ=255) aaTTACCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGc < 2:1013508/100‑1 (MQ=255) aTTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGCt > 2:1872967/1‑100 (MQ=255) gCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGCTGcc > 1:2272426/1‑100 (MQ=255) ccGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGCTGCCg < 1:448927/99‑1 (MQ=255) gTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGCTGCCGATgg > 1:1449231/1‑100 (MQ=255) tGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGCTGCCGATGGc > 1:520537/1‑100 (MQ=255) ggggCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGCTGCCGATGGCGTCAtt > 1:2609/1‑100 (MQ=255) | CTCCCGTCGCCTGAGCGCCAATATTGATATCATCACCGATGGCCTCTCGACTCTGGCACAAAATATTCCCACTCGATTACCACAATTGCCCGGTGAAATGGGGCAAATCAGTCAGAGTGTTAATAACCTCGCCCAGGCACTGCGTGAAACGCGGACACTTAACGATCTGATTATTGAAAACGCTGCCGATGGCGTCATT > NC_000913/2320672‑2320870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |