New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2617939 =	NA (NA)	7 (0.070)	5/164	NT	NA	intergenic (+2/+136)	yfgD/hda	putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
	?	NC_000913	2617967 =	NA (NA)					intergenic (+30/+108)	yfgD/hda	putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation

ACGCCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2618044‑2617939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacatTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAAT  >  NC_000913/2617967‑2618063                                                                                                                                                                                                             ACGCCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGA                                                                                                         <  2:2725263/100‑1   GCCTTATCCTAACTACGCGAAGTTAATCCATAGTATTCGTAGGCAGGATAAGACGTGGCAAGCGTCGCATCCGTCAATGTGCTTCAACTAGCGATGGAGC                                                                                                       <  2:2946898/100‑1   GCCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGC                                                                                                       <  2:2994113/100‑1    CCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCA                                                                                                      >  2:1182354/1‑100    CCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCA                                                                                                      >  1:800763/1‑100       TATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACAT                                                                                                   >  2:786539/1‑100       TATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACAT                                                                                                   >  1:1442220/1‑100       TATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACAT                                                                                                   >  1:789406/1‑100        ATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGAAGCACAT                                                                                                   >  1:2825468/1‑99                                                                         nCGGCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTT                                 >  2:2424787/2‑100                                                                         CCGGCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTT                                 >  2:1496257/1‑100                                                                           GGCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGGTTAACTCCGCGTA                                    >  2:1716793/1‑95                                                                           GGCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCTCGTAGATCG                               >  1:220327/1‑100                                                                            GCAATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACAAATACTATGGATTAACTTCGCGTAGTTCGG                              >  1:737277/1‑100                                                                              AATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCTCGTCTTATTCGGCCTACAAATATTATGGATTAACTTCGCGTAGTTTGGAT                            >  1:690241/1‑100                                                                               ATGTGCTTCAACTAGCGATGGAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATA                           >  1:2286234/1‑100                                                                                                     GCACATTGGCGGATGCGACGCTTGCCACGTCTTATCCGGCCTATGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGAC     <  1:2617149/100‑1                                                                                                     GCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGAC     <  1:64559/100‑1                                                                                                     GCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGAC     >  2:610548/1‑100                                                                                                        CATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTGCGATAAGGCGTTCGCGCCGCATCCGAC     >  2:960997/1‑97                                                                                                        CATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAAT  >  2:902632/1‑100                                                                                                        CATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAAT  <  2:1396782/100‑1                                                                                                                                                                                                             ACGCCTTATCCGAACTACGCGAAGTTAATCCATAGTATTCGTAGGCCGGATAAGACGTGGCAAGCGTCGCATCCGGCAATGTGCTTCAACTAGCGATGGAGCACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2618044‑2617939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacatTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATAAGGCGTTCGCGCCGCATCCGACAAT  >  NC_000913/2617967‑2618063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.