| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3296997 = | NA (NA) | 10 (0.100) | 8/168 | NT | NA | intergenic (+13/+101) | yraP/yraQ | outer membrane lipoprotein/putative inner membrane permease |
| ? | NC_000913 | 3297033 = | NA (NA) | noncoding (35/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATtacaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3297095‑3296997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGA > NC_000913/3297033‑3297136 TGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTTACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATT < 2:1242752/100‑1 GAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTA < 2:1653265/100‑1 AGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTAC < 2:2858002/100‑1 AGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTAC > 1:2995662/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:2351996/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:154406/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:2429424/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 2:318066/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 2:2795156/1‑100 GGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACA > 1:1980672/1‑100 GGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAAACGCGGCAAGCGTCGCATCAGGCATTACAA > 1:878353/1‑100 GAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTCGTATCGATGTAAGCATGATAAGACGCGGCAAGCGTCGCAACAGGCATTAC > 2:2328901/1‑97 GTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGATCAAATAAGGCGTTTACGCCGCATCCGACATG > 1:744192/1‑100 TATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAAGTCAGATAAGGCGTTTACGCCGCATCCGACATGT > 1:1751684/1‑100 TCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTT > 1:2007295/1‑100 ctcttccgatCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTC < 1:705577/90‑1 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGTCATGTTTTCCCTCA > 2:2782134/1‑97 CTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATC > 2:1624715/1‑100 GATAAGACGCGGCAAGCGTCGCATCAGGCA‑TACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGA > 2:497412/1‑100 AGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAACCCGTAGGTCAGATACGGCGTTTACGCCGCATCCCACATGTTTTCCCTCAAATCAGAAC > 2:2246269/1‑99 CGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGC > 1:687597/1‑100 CGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCG > 1:904709/1‑100 GGCATTACAAGGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT > 2:275334/1‑100 ACAACGATACAAACCGTAGGTCAGATAAGGTGTTTACGTTGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACC < 1:928022/100‑1 ACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACC < 2:2182837/100‑1 ACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACC < 1:474431/100‑1 ACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACC < 1:2858034/100‑1 CAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCA > 2:1795829/1‑100 CAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCA > 1:2352167/1‑100 CAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACC > 2:33879/1‑99 AACAATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGTCCACCGACAATCACACC < 2:1499153/98‑1 ACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGA < 2:1156798/100‑1 ACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGA > 2:1146994/1‑100 TGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATtacaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3297095‑3296997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCACACCAGA > NC_000913/3297033‑3297136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |