New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3296997 =NA (NA)10 (0.100) 8/168 NT NA intergenic (+13/+101) yraP/yraQ outer membrane lipoprotein/putative inner membrane permease
?NC_000913 3297033 = NA (NA)noncoding (35/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 156 total aligned reads displayed.

GGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCA  >  NC_000913/3296935‑3297129
                                                                                                  |                                                                                                
gagggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcatTa                                                                                                 <  2:1653265‑M2/2‑1 (MQ=255)
 ggTGAGTGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                                                                <  2:1956370/100‑1 (MQ=255)
 ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                                                                <  1:1178856/100‑1 (MQ=255)
 ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc                                                                                                <  2:580716/100‑1 (MQ=255)
 ggTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCATCTTATCAGGCCTAc                                                                                                >  1:708648/1‑100 (MQ=255)
 agggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcatTAc                                                                                                >  1:2995662‑M2/98‑100 (MQ=255)
  gggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcatTACa                                                                                               >  1:2429424‑M2/97‑100 (MQ=255)
  gggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcatTACa                                                                                               >  2:2795156‑M2/97‑100 (MQ=255)
  gggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcatTACa                                                                                               >  2:318066‑M2/97‑100 (MQ=255)
  gggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcatTACa                                                                                               >  1:1980672‑M2/97‑100 (MQ=255)
  gggaaaacatgtcggatgcggcgtaaacgccttatctgacctacggtttgtatcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcatTACa                                                                                               >  1:154406‑M2/97‑100 (MQ=255)
  gTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACa                                                                                               >  1:2150026/1‑100 (MQ=255)
   tGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACTCTTGCCGCGTCTTATCAGGCCTACa                                                                                               <  2:607693/99‑1 (MQ=255)
    gAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                                                             <  2:2430569/100‑1 (MQ=255)
     aGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAc                                                                                             <  2:533079/99‑1 (MQ=255)
      gcggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGa                                                                                           >  1:1630153/1‑100 (MQ=255)
       cggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACg                                                                                            <  2:2989252/98‑1 (MQ=255)
       cggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGAt                                                                                          <  2:2505985/100‑1 (MQ=255)
        ggcgTTAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTTATGCGACGCTTGCCGTGTTTTATCAGGCCTACAACGAt                                                                                          <  2:1480009/99‑1 (MQ=38)
        ggcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCTTCTTATCAGGCCTACAACGATa                                                                                         <  2:724639/100‑1 (MQ=255)
        acatgtcggatgcggcgtaaacgccttatctgacttacggtttgtatcgttgtaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATa                                                                                         >  1:1751684‑M1/55‑100 (MQ=255)
         gcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATAc                                                                                        <  1:1717699/100‑1 (MQ=255)
         gcgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATAc                                                                                        <  2:251032/100‑1 (MQ=255)
         catgtcggatgcggcgtaaacgccttatttgatctacggtttgtatcgttgtaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATAc                                                                                        >  1:744192‑M1/54‑100 (MQ=255)
          cgTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACa                                                                                       <  2:375514/100‑1 (MQ=255)
             gAAGCGGTTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                                                    <  1:1853138/100‑1 (MQ=255)
             gAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                                                    >  2:2321019/1‑100 (MQ=255)
             gAAGCGGGTAACTACAGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAAc                                                                                    <  1:3001855/100‑1 (MQ=255)
                 cGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTa                                                                                <  2:797871/100‑1 (MQ=255)
                 cGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGACCTACAACGATACAAACCGt                                                                                 <  2:484185/99‑1 (MQ=255)
                 cGGGTAACTACGGCGTTTACGTTAATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGt                                                                                 >  2:647962/1‑99 (MQ=255)
                   ggTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTGGCCGCGTCTTATCAGGTCTACAACGATACAAACCGTAgg                                                                              <  2:384800/100‑1 (MQ=255)
                     tAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTc                                                                            <  1:2243536/100‑1 (MQ=255)
                     tAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTc                                                                            <  1:2526999/100‑1 (MQ=255)
                        cTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCTACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGa                                                                         <  1:821314/100‑1 (MQ=255)
                        cTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGa                                                                         >  1:381230/1‑100 (MQ=255)
                         tACGGCGTTTACGTTTATTAAATAGCAGCTCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGAt                                                                        <  1:802576/100‑1 (MQ=255)
                         tACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGAt                                                                        >  1:104632/1‑100 (MQ=255)
                             gCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAgg                                                                    <  1:702342/100‑1 (MQ=255)
                                  tacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAATCGTAGGTCAGATAAGGCGttt                                                               <  2:954354/100‑1 (MQ=255)
                                  tacgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGttt                                                               <  2:1983223/100‑1 (MQ=255)
                                   acgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTa                                                              >  1:103445/1‑100 (MQ=255)
                                    cgtttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGACCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAc                                                             >  1:34096/1‑100 (MQ=255)
                                      tttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                                                           >  2:474428/1‑100 (MQ=255)
                                      tttaTTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgc                                                           <  2:1455515/100‑1 (MQ=255)
                                         attaAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                                                          >  2:764948/1‑98 (MQ=255)
                                           taAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCTTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCAt                                                      <  1:903549/100‑1 (MQ=255)
                                            aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATc                                                     >  2:2326677/1‑100 (MQ=255)
                                            aaaTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATc                                                     >  2:1924410/1‑100 (MQ=255)
                                              aTAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTATTATCAGGACTACTACGATACAAACCGTAGGTCAGATAAGGCGTTTAcgcc                                                          >  2:113148/1‑93 (MQ=255)
                                               tAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGa                                                  >  1:2782377/1‑100 (MQ=255)
                                               tAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAAATAAGGCGTTTACGCCGCATCCGa                                                  >  1:848275/1‑100 (MQ=255)
                                                agcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGAc                                                 <  1:533377/100‑1 (MQ=255)
                                                 gcagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACa                                                >  1:1207912/1‑100 (MQ=255)
                                                  cagcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACAt                                               >  2:1444573/1‑100 (MQ=255)
                                                   agcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATg                                              >  2:2313028/1‑100 (MQ=255)
                                                    gcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGt                                             >  1:1877942/1‑100 (MQ=255)
                                                    gcCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCACGCCTACAACGATACCAACCGTAGGTCACATAAGGTGTTGACACCGCATCCGACATg                                              >  2:287630/1‑99 (MQ=21)
                                                     ccccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCATATAAGGCGTTTACGCCGCATCCGACa                                                <  2:245841/96‑1 (MQ=255)
                                                      tcgttgtaggcctgataagacgcggcaagcgtcgcatcaggcatTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGttt                                           >  1:2007295‑M2/45‑100 (MQ=255)
                                                      cccTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGttt                                           >  1:1625234/1‑100 (MQ=255)
                                                         ttgtaATGCCTGATGCGACGCTTGCCGCGTTTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTcc                                        >  1:878353‑M1/6‑100 (MQ=255)
                                                          tgtaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTccc                                       >  1:2351996‑M1/5‑100 (MQ=255)
                                                          tgtaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTccc                                       >  1:154406‑M1/5‑100 (MQ=255)
                                                          tgtaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTccc                                       >  1:2429424‑M1/5‑100 (MQ=255)
                                                          tgtaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTccc                                       >  2:318066‑M1/5‑100 (MQ=255)
                                                           gtaATGCCTGTTGCGACGCTTGCCGCGTCTTATCATGCTTACATCGATACGAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTc                                         >  2:2328901‑M1/4‑97 (MQ=255)
                                                           gtaATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCt                                      <  2:2858002‑M1/97‑1 (MQ=255)
                                                             aATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTAAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCa                                    <  2:1242752‑M1/99‑1 (MQ=255)
                                                                gcctgataagacgcggcaagcgtcgcatcaggccTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGTCATGTTTTCCCTCa                                    >  2:2782134‑M2/35‑97 (MQ=255)
                                                                 ctgataagacgcggcaagcgtcgcatcaggcatTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATc                                >  2:1624715‑M2/34‑100 (MQ=255)
                                                                 ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATc                                <  2:1327857/100‑1 (MQ=255)
                                                                   tGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAg                              <  2:1241402/100‑1 (MQ=255)
                                                                   tGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAg                              >  2:670082/1‑100 (MQ=255)
                                                                    gATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGa                             >  1:1234693/1‑100 (MQ=255)
                                                                      tGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaac                           <  1:2806856/100‑1 (MQ=255)
                                                                       agacgcggcaagcgtcgcatcaggcatTACAACGATACAACCCGTAGGTCAGATACGGCGTTTACGCCGCATCCCACATGTTTTCCCTCAAATCAGaac                           >  2:2246269‑M2/28‑99 (MQ=255)
                                                                         gACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaacaac                        >  2:288203/1‑100 (MQ=255)
                                                                           gatctGCCGCGTCTTATCAGGCCTACAACGATACAAACCATAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAg                      <  1:1277742/96‑1 (MQ=255)
                                                                           cGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGaacaac                        <  2:2107745/98‑1 (MQ=255)
                                                                            cggcaagcgtcgcatcaggcatTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAgc                     >  1:687597‑M2/23‑100 (MQ=255)
                                                                             cggcaagcgtcgcatcaggccTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAgcg                    >  1:904709‑M2/22‑100 (MQ=255)
                                                                                gCCGCGTCTTATCAGGCCTACAACGATACAAACCATAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAgagatc                 >  2:1277730/1‑95 (MQ=255)
                                                                                 ccGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAg                <  2:2092589/100‑1 (MQ=255)
                                                                                 ccGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAg                >  2:1814223/1‑100 (MQ=255)
                                                                                  cgcgTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGc               >  1:2970288/1‑100 (MQ=255)
                                                                                        ttATCGAGCCTACAACGATACAAGCCGTAGGGCAGATAAGGCGTTTACGCCGCCTCCGACATGTTTTCCCTCACTTCAGGACAACAGCGACAGAccgcc          <  2:1195451/99‑1 (MQ=25)
                                                                                        ttATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCccgccg         >  2:861162/1‑100 (MQ=255)
                                                                                         tATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATAAGAACAACAGCGCCAGCCCGCCGa        >  1:2891324/1‑100 (MQ=255)
                                                                                         tATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTAAAATAAGAACAACAGCGCCAGCCCGCCGa        >  1:8650/1‑100 (MQ=255)
                                                                                          aTCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGAc       <  1:627455/100‑1 (MQ=255)
                                                                                          aTCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGATTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGAc       >  1:972975/1‑100 (MQ=255)
                                                                                            cAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACaa     >  1:1460421/1‑100 (MQ=255)
                                                                                            cAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACaa     >  2:2608841/1‑100 (MQ=255)
                                                                                             ggcatTACAAGGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAt    >  2:275334‑M2/6‑100 (MQ=255)
                                                                                              ggCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATc   <  2:2777599/100‑1 (MQ=255)
                                                                                              ggCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATc   <  1:1444587/100‑1 (MQ=255)
                                                                                               gCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATca  <  1:1423446/100‑1 (MQ=255)
                                                                                               gCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATca  <  2:2749412/100‑1 (MQ=255)
                                                                                               gCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATca  <  1:481268/100‑1 (MQ=255)
                                                                                                  |                                                                                                
GGGTGAGCGGCGTGAAGCGGGTAACTACGGCGTTTACGTTTATTAAATAGCAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCA  >  NC_000913/3296935‑3297129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.