New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 347108250 (0.460)16 (0.160) 10/168 NT 30.4% coding (248/1185 nt) tufA translation elongation factor EF‑Tu 1
?NC_000913 = 3471110 26 (0.250)coding (220/1185 nt) tufA translation elongation factor EF‑Tu 1

CGCAGCAACTACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3471006‑3471082
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccgACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGTAG  <  NC_000913/3471110‑3471014
                                                                                                                                                                              
CGCAGCAACTACCAGGATCGCGCCTTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGT‑‑CTACGCACACGTAGACT                                                                          <  1:573486/100‑1
 GCAGCAACTACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGT‑‑CTACGCACACGTAGACTG                                                                         <  1:1035031/100‑1
  CAGCAACTACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGT‑‑CTACGCACACGTAGACTGC                                                                        <  2:26980/100‑1
         TACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGG                                                                   >  2:626285/1‑100
         TACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGG                                                                   <  1:37753/100‑1
           CCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGC                                                                 <  1:626289/100‑1
            CAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCA                                                                <  1:1937679/100‑1
            CAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCA                                                                <  2:1328595/100‑1
             AGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCAC                                                               <  1:2891005/100‑1
              GGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACG                                                              <  1:1283132/100‑1
              GGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACG                                                              <  2:563187/100‑1
               GATCGCGCCGTCCATCTGCGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGC                                                             <  2:2649527/100‑1
                ATCGCGCCGTCCATCTGCGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGC                                                             <  2:2651260/99‑1
                 TCGCGCCGTCCATCTTCGCAGCACCTGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCG                                                           <  1:2078092/100‑1
                  CGCGCCGTCCATCTGCGCAGCACCGGTGTTCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGA                                                          <  2:129304/100‑1
                                               TCATGTTTTTAACATAGTCGGCGTGCCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTG                             <  1:49461/100‑1
                                                                        CCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGT    >  1:2640758/1‑100
                                                                        CCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGT    >  1:2331515/1‑100
                                                                        CCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGT    <  1:1600074/100‑1
                                                                        CCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGT    <  2:748667/100‑1
                                                                        CCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTACTCAGATGAACGGCGCGATCCTGGT    >  1:1428399/1‑100
                                                                        CCCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATAATCACAGGTGCTGCTCAGATTGAGGGCGCGATCCT       >  2:1485592/1‑97
                                                                         CCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGTA   <  1:508844/100‑1
                                                                         CCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGTA   >  1:2980508/1‑100
                                                                         CCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGTA   <  1:2096011/100‑1
                                                                         CCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGTA   >  1:1339052/1‑100
                                                                         CCCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATAACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGTA   >  1:2132797/1‑100
                                                                          CCGACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGTAG  <  2:2012790/100‑1
                                                                                                                                                                              
CGCAGCAACTACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3471006‑3471082
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccgACCCGTCACTACGCACACGTAGACTGCCCGGGGCACGCCGACTATGTTAAAAACATGATCACCGGTGCTGCTCAGATGGACGGCGCGATCCTGGTAG  <  NC_000913/3471110‑3471014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.