| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3471082 | 50 (0.460) | 16 (0.160) | 10/168 | NT | 30.4% | coding (248/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | = 3471110 | 26 (0.250) | coding (220/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
CTACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCC > NC_000913/3471014‑3471209 | cTACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcgg < 2:2012790‑M2/100‑4 (MQ=255) tACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTTATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggg > 1:2132797‑M2/1‑96 (MQ=255) tACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggg < 1:2096011‑M2/100‑5 (MQ=255) tACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggg > 1:2980508‑M2/1‑96 (MQ=255) tACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggg < 1:508844‑M2/100‑5 (MQ=255) tACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggg > 1:1339052‑M2/1‑96 (MQ=255) aCCAGGATCGCGCCGTTCATCTGAGTAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcgggg > 1:1428399‑M2/1‑95 (MQ=255) aCCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcgggg < 1:1600074‑M2/100‑6 (MQ=255) aCCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcgggg < 2:748667‑M2/100‑6 (MQ=255) aCCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcgggg > 1:2331515‑M2/1‑95 (MQ=255) aCCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcgggg > 1:2640758‑M2/1‑95 (MQ=255) acAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGgt < 1:2021149/99‑1 (MQ=17) aGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGgtgt < 1:1519790/100‑1 (MQ=32) aGGATCGCGCCCTCAATCTGAGCAGCACCTGTGATTATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcgggg > 2:1485592‑M2/1‑92 (MQ=255) ggATCGCGCCGTCCATCTGAGCAGCACTGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGgtgt < 1:274610/99‑1 (MQ=17) ggATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTc < 2:598301/100‑1 (MQ=33) ggATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTc < 1:841315/100‑1 (MQ=32) gATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCg < 1:53450/100‑1 (MQ=32) gATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCg < 2:823743/100‑1 (MQ=32) gATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACAAAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCg > 2:1678759/1‑100 (MQ=18) aTCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGt > 2:1553445/1‑100 (MQ=33) tCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTa < 2:2175117/100‑1 (MQ=33) tCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTa < 2:1188568/100‑1 (MQ=33) gcCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCa < 1:45277/100‑1 (MQ=32) gTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTAtt > 2:1790222/1‑95 (MQ=32) gTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACg < 2:835987/100‑1 (MQ=33) gTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACg > 2:289562/1‑100 (MQ=32) tCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGt > 2:1147029/1‑100 (MQ=32) cATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTga < 2:1338551/100‑1 (MQ=33) cATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTga < 2:1291415/100‑1 (MQ=33) cATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTg < 1:452386/99‑1 (MQ=32) tGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAg > 1:817469/1‑100 (MQ=32) tGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAg < 1:2239316/100‑1 (MQ=32) tGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGGCTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAg < 2:1654119/100‑1 (MQ=12) gAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAgt > 2:2408002/1‑100 (MQ=31) agcagcACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTCGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAgtg > 2:1917473/1‑100 (MQ=11) agcagcACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAgtg < 2:1900868/100‑1 (MQ=11) cagcaCCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatga < 1:49461‑M2/100‑31 (MQ=255) tCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgaacaccggtgctgcgcagatggacggcgcg < 2:129304‑M2/100‑60 (MQ=255) cGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcacaggtgctgcgaagatggacggcgcga < 1:2078092‑M2/100‑61 (MQ=255) gCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgatc < 2:2649527‑M2/100‑63 (MQ=255) gCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgcgcagatggacggcgcgat < 2:2651260‑M2/99‑62 (MQ=255) cGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcc < 2:563187‑M2/100‑64 (MQ=255) cGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcc < 1:1283132‑M2/100‑64 (MQ=255) gTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcct < 1:2891005‑M2/100‑65 (MQ=255) tGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcctg < 2:1328595‑M2/100‑66 (MQ=255) tGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcctg < 1:1937679‑M2/100‑66 (MQ=255) gCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcctgg < 1:626289‑M2/100‑67 (MQ=255) cccGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcctggta > 2:626285‑M2/1‑32 (MQ=255) cccGGGCAGTCTACGTGTGCGTAGTGACGGGTcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcctggta < 1:37753‑M2/100‑69 (MQ=255) gCAGTCTACGTGTGCGTAG‑‑ACTGCCcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcctggtagttgctg < 2:26980‑M2/100‑76 (MQ=255) cAGTCTACGTGTGCGTAG‑‑ACTGCCcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggacggcgcgatcctggtagttgctgc < 1:1035031‑M2/100‑77 (MQ=255) aGTCTACGTGTGCGTAG‑‑ACTGCCcggggcacgccgactatgttaaaaacatgatcaccggtgctgctcagatggaaggcgcgatcctggtagttgctgcg < 1:573486‑M2/100‑78 (MQ=255) gCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCAc > 2:1980730/1‑100 (MQ=31) cGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTTTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACg < 1:817973/100‑1 (MQ=17) cGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACg < 1:2987339/100‑1 (MQ=32) aGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGagn < 1:2312677/100‑2 (MQ=17) gTGACGGCTCGGGGTGTCGTATTCACAGTGAGAAGTGTCGATGGTGATACCACGAGCCTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGagca < 2:1045099/100‑1 (MQ=11) tGACGGGTCGGGGTGTCGTATTAAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGagca > 2:1757392/1‑99 (MQ=17) gACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTTTTTTTTTTCTTTATCGATCTGGTCGAATGCACGagcagc > 2:2707493/1‑100 (MQ=11) gACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGagcagc > 2:1793552/1‑100 (MQ=33) gACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCAGGCGCGTTATCGATCTGGTCGAATGCACGagca > 1:972137/1‑98 (MQ=17) cGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCAc > 1:542768/1‑100 (MQ=33) ggTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCAccg > 2:887429/1‑100 (MQ=32) gTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCAccgc > 2:729095/1‑100 (MQ=32) tCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCAccgcc > 2:30605/1‑100 (MQ=33) | CTACCAGGATCGCGCCGTCCATCTGAGCAGCACCGGTGATCATGTTTTTAACATAGTCGGCGTGCCCCGGGCAGTCTACGTGTGCGTAGTGACGGGTCGGGGTGTCGTATTCAACGTGAGAAGTGTTGATGGTGATACCACGAGCTTTTTCTTCCGGCGCGTTATCGATCTGGTCGAATGCACGAGCAGCACCGCC > NC_000913/3471014‑3471209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |