| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4584195 = | 122 (1.130) | 15 (0.150) | 7/164 | NT | 11.9% | coding (2567/3513 nt) | hsdR | endonuclease R Type I restriction enzyme |
| ? | NC_000913 | 4584232 = | 109 (1.100) | coding (2530/3513 nt) | hsdR | endonuclease R Type I restriction enzyme | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
AACAGATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4584300‑4584195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgacacAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTCATCTGTTCGTACAGAATGCGGCTGCGTACTTTACGCA > NC_000913/4584232‑4584330 AACAGATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGT > 1:1704061/1‑100AACAGATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGT > 1:576740/1‑100 ACAGATGAAAGGCCGCGCCACGCGCTTATGTCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTC < 1:829463/100‑1 CAGATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCG < 2:431990/100‑1 CAGATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCG < 1:2017397/100‑1 GATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGAC > 2:420716/1‑100 GATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGAC < 2:341959/100‑1 GATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGAC < 1:2870934/100‑1 TGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGACTAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACAC > 1:2140775/1‑100 TGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACAC > 1:1969858/1‑100 TGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACAC > 2:1568088/1‑100 TGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACAC > 1:2974817/1‑100 TGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACAC > 1:2974883/1‑100 GGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTTACTTTTTCTATATCTAAAGCACGCTAGAGAGCGTCGACAacat > 2:30776/1‑94 AGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGG > 2:440088/1‑100 TGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCC > 1:1285876/1‑100 TGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCC > 1:2345093/1‑100 TGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCC > 1:2871431/1‑100 GACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTTACGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCT > 1:541975/1‑100 GACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCT > 1:2922747/1‑100 GACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCT > 2:2072841/1‑100 GACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCT > 2:2175175/1‑100 GACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCT > 2:2847718/1‑100 GACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAAGCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCC > 2:598736/1‑99 ACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTT > 2:2593206/1‑100 ACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACATCCGGGCATAAGCGCGTGGCGCGGCCTT > 1:1749977/1‑100 CTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTT > 1:1071747/1‑100 TGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTC > 2:2249503/1‑100 GATATCTACAGCACGCTGGAGAGCGTCGACACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTCATCTGT > 2:1488250/1‑100 ACACAGTCAAAAATCTTAAAGCTGGTCTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTCATCTGTTCGTACAGAATGCGGCTGCGTACTTTAC > 1:850377/1‑100 ACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTCATCTGTTCGTACAGAATGCGGCTGCGTACTTTACGC < 1:2010368/100‑1 ACAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTCATCTGTTCGTACAGAATGCGGCTGCGTACTTTACG > 2:342720/1‑99 CAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTCATCTGTTCGTACAGAATGCGGCTGCGTACTTTACGCA < 2:2176987/100‑1 CAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTCATCTGTTCGTACAGAATGCGGCTGCGTACTTTACGCA < 1:19642/100‑1 AACAGATGAAAGGCCGCGCCACGCGCTTATGCCCGGAGGTGAATAAAACCAGCTTTAAGATTTTTGACTGTGTCGATATCTACAGCACGCTGGAGAGCGTCGACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4584300‑4584195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgacacAGTCAAAAATCTTAAAGCTGGTTTTATTCACCTCCGGGCATAAGCGCGTGGCGCGGCCTTTCATCTGTTCGTACAGAATGCGGCTGCGTACTTTACGCA > NC_000913/4584232‑4584330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |