| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4637531 | 107 (0.990) | 7 (0.070) | 5/162 | NT | 6.4% | coding (836/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | = 4637546 | 107 (1.090) | coding (851/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GAAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4637425‑4637531‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggaCCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < NC_000913/4637546‑4637449 GAAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAG < 1:171067/100‑1GAAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAG < 1:2639811/100‑1 AAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGC > 2:391391/1‑100 AAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGC < 1:309160/100‑1 TATGCGGGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATGAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCG < 2:1323276/100‑1 TATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGTCGGCGATTCGTGGAGCGGCG < 2:1091503/100‑1 TATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCG > 1:484784/1‑100 TATGCGCGTGAAGCTGGAAGGGAAAAACTATATTAAGCAGTATGTTTACGCATTAACGCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCG < 2:193146/100‑1 ATGCCCGTGAAGCTGGAAAGGAAAAACTATATTGAGCAGTATGTATACGCATTAACTCATGAGCTAAAAAGCCCACTGGCCACGATTCATGGAGCGGCG > 2:511147/1‑99 GCGCGTGAAGCTGGAAGGGAAAAGCTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGG < 2:1069156/98‑1 AAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCTACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCC < 1:859782/100‑1 AAACTGTATTGAGGAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCC < 2:2504718/99‑1 TATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCC < 1:806504/100‑1 TATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCAC < 2:1330164/100‑1 ATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCACG < 2:534723/100‑1 ATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCACG < 1:339466/100‑1 AGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATC < 1:595806/100‑1 CGGCGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTT < 2:1173160/100‑1 GCGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTT > 2:2389481/1‑100 GCGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTT > 1:161295/1‑100 GCGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGAGCTTTTTAGCTCATGAGATAATGCGTAAACATAATGCTCAATATAGat > 1:161478/1‑95 CGGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAACGCGTAAACATACTGCTCAATATAGTTTTTC < 1:1379160/100‑1 GGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCTAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCC < 1:774756/100‑1 GGACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCC > 2:2109644/1‑100 GACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < 2:1408956/100‑1 GACCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < 2:1689819/100‑1 GAAAGTATGCGCGTGAAGCTGGAAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4637425‑4637531‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcggaCCTTCGCGTAAAATTTCCGCCGCTCCACGAATCGCCGCCAGTGGGCTTTTTAGCTCATGAGTTAATGCGTAAACATACTGCTCAATATAGTTTTTCCC < NC_000913/4637546‑4637449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |