New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4637531107 (0.990)7 (0.070) 5/162 NT 6.4% coding (836/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
?NC_000913 = 4637546 107 (1.090)coding (851/1425 nt) creC sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

Only 100 of 136 total aligned reads displayed.

AAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAG  >  NC_000913/4637447‑4637642
                                                                                                   |                                                                                                
aaGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAgg                                                                                                  >  1:2478996/1‑100 (MQ=255)
aaGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGAGGCGGAAATTTTACGCGAAgg                                                                                                  >  2:1015735/1‑100 (MQ=255)
  gggAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGtc                                                                                                <  2:1689819‑M2/100‑3 (MQ=255)
   ggAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTAGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGtcc                                                                                               <  1:774756‑M2/100‑4 (MQ=255)
    gAAAAACTATATTGAGCAGTATGTTTACGCGTTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGtccg                                                                                              <  1:1379160‑M2/100‑5 (MQ=255)
     aaaaaCTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGtccgc                                                                                             >  2:2389481‑M2/1‑95 (MQ=255)
     aaaaaCTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGtccgc                                                                                             >  1:161295‑M2/1‑95 (MQ=255)
        atctaTATTGAGCATTATGTTTACGCATTATCTCATGAGCTAAAAAGCTCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGtccgc                                                                                             >  1:161478‑M2/3‑92 (MQ=255)
         aCTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTccgccgcc                                                                                         >  2:3033863/1‑100 (MQ=255)
          cTATATTGAGCAGTATGTTTATGTATTAACTCATGTGTTAAAAAGCCTACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTccgccgccg                                                                                        <  1:575857/100‑1 (MQ=255)
           tataTTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTccgccgccg                                                                                        <  1:1493175/99‑1 (MQ=255)
           tataTTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCgg                                                                                       >  1:1015003/1‑100 (MQ=255)
            atatTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCggn                                                                                      <  1:2095533/100‑2 (MQ=255)
              atTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGTAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAg                                                                                    <  2:2985501/100‑1 (MQ=255)
              atTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAg                                                                                    <  2:500441/100‑1 (MQ=255)
                tGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAgtg                                                                                  <  2:794197/100‑1 (MQ=255)
                 gAGCAGTATGTTAACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAgtgg                                                                                 >  1:2000526/1‑100 (MQ=255)
                  aGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGGGCGGCGGAAGTTTTACGCGAAGGTGCGCCGGCGGAAgggg                                                                                 >  2:2527542/1‑99 (MQ=255)
                  aGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAgtggt                                                                                >  2:1876494/1‑100 (MQ=255)
                   gCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAgtggtg                                                                               >  2:474868/1‑100 (MQ=255)
                       tATGTTTACGCATTAACTAATGAGCGAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGACGCCGGAAgtggtg                                                                               <  2:31717/96‑1 (MQ=255)
                        aTGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCg                                                                          <  1:2226762/100‑1 (MQ=255)
                        aTGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCg                                                                          <  2:529602/100‑1 (MQ=255)
                          gTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGt                                                                         >  1:838979/1‑99 (MQ=255)
                           tttACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTCTAAGCGAAGGTCCGCCGCCGGAAGTGATGGCTCgct                                                                        >  2:1929350/1‑97 (MQ=255)
                            ttACGCATTAACTCATGAGCAAAAAAGCCCACTGGCCGCCATTCGTGTAGCGACGTAAATTTTACGCGAAGGTTCGCCGCCTGAAATGGTGGCGCGtatt                                                                      <  2:638443/100‑1 (MQ=255)
                             tACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTa                                                                     >  2:1050710/1‑100 (MQ=255)
                              aCGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTAc                                                                    <  2:2514395/100‑1 (MQ=255)
                              aCGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTAc                                                                    <  2:962603/100‑1 (MQ=255)
                                gCATTTACTCATGAGCTAAATAGCCCACTGTCGGCGATTCGTGGAGCGGTGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTg                                                                  <  1:1802411/100‑1 (MQ=255)
                                gCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTg                                                                  <  2:1069787/100‑1 (MQ=255)
                                  aTTAACTCATGAGCTAAAAAGCTCTCTGGCGGCGATTGGTGGAGCGGCGGAATTTTTACTCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTAc                                                                    <  2:1355655/96‑1 (MQ=255)
                                   ttAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGaca                                                               >  1:1064204/1‑100 (MQ=255)
                                   ttAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGaca                                                               <  1:2461717/100‑1 (MQ=255)
                                   ttAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGaca                                                               >  1:650348/1‑100 (MQ=255)
                                    tAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGacaa                                                              >  1:1035972/1‑100 (MQ=255)
                                     aaCTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGGCGGAAGTGGTGGCTCGTTTTACTGacaac                                                             >  1:1367751/1‑100 (MQ=255)
                                       cTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGagatcgg                                                           >  2:256920/1‑94 (MQ=255)
                                           tGAGCTAAAACGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCTGATGTGGTGGCTCGTTTTACTGACAACATTCTg                                                       <  2:2000503/100‑1 (MQ=255)
                                           tGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTg                                                       <  2:2478967/100‑1 (MQ=255)
                                            gAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGAGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGa                                                      >  2:1623532/1‑100 (MQ=255)
                                             aGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGAc                                                     <  1:2209216/100‑1 (MQ=255)
                                              tcTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACg                                                    <  1:2647760/99‑1 (MQ=255)
                                              gCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACg                                                    >  2:1641774/1‑100 (MQ=255)
                                              gCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGAGGCTCGTTTTACTGACAACATTCTGACg                                                    <  2:864462/100‑1 (MQ=255)
                                               cTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGc                                                   <  2:2377634/100‑1 (MQ=255)
                                               cTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGc                                                   <  1:1960828/100‑1 (MQ=255)
                                                tAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCa                                                  >  2:2786039/1‑100 (MQ=255)
                                                tAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCa                                                  <  1:1050717/100‑1 (MQ=255)
                                                tAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCa                                                  >  1:2286677/1‑100 (MQ=255)
                                                 aaaaaGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACgaga                                                 >  2:2647728/1‑97 (MQ=255)
                                                 aaaaaGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCaa                                                 >  2:481055/1‑100 (MQ=255)
                                                 aaaaaGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCaa                                                 >  2:936056/1‑100 (MQ=255)
                                                 aaaaaGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTACGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGAAGCaa                                                 >  1:384830/1‑100 (MQ=255)
                                                        ccACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATgcgc                                          >  2:2071796/1‑100 (MQ=255)
                                                         cACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAATTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGcgcg                                         <  2:153050/100‑1 (MQ=255)
                                                         cACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGcgcg                                         <  2:2851607/100‑1 (MQ=255)
                                                         cACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGcgcg                                         <  1:1130797/100‑1 (MQ=255)
                                                         cACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGcgcg                                         <  1:2559620/100‑1 (MQ=255)
                                                             ctcggcgATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATg                                     <  1:2609427/98‑1 (MQ=255)
                                                              gcggcgATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGc                                    <  2:2233870/100‑1 (MQ=255)
                                                               cggcgATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCTCCTGAAGTGGTGGTTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCa                                   <  1:793446/100‑1 (MQ=255)
                                                               cggcgATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATgag                                   >  2:2609395/1‑98 (MQ=255)
                                                                ggtgATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAg                                  <  1:289400/97‑1 (MQ=255)
                                                                   gATTCGTGGAGCGGCGGAAATTTTACGCGAAGGtccgccgctccacgaatcgccgccagtgggctttttagctcatgagttaatgcgtaaacatactgct                               <  1:595806‑M2/100‑68 (MQ=255)
                                                                     ttCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCAtt                             <  2:2408172/100‑1 (MQ=255)
                                                                       cttccgatctcggAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTgg                           <  2:2827792/90‑1 (MQ=255)
                                                                       cGTGGAGCGGCGGAAATTTTACGCGAAGGtccgccgctccacgaatcgccgccagtgggctttttagctcatgagttaatgcgtaaacatactgctcaat                           <  2:534723‑M2/100‑72 (MQ=255)
                                                                       cGTGGAGCGGCGGAAATTTTACGCGAAGGtccgccgctccacgaatcgccgccagtgggctttttagctcatgagttaatgcgtaaacatactgctcaat                           <  1:339466‑M2/100‑72 (MQ=255)
                                                                        gTGGAGCGGCGGAAATTTTACGCGAAGGtccgccgctccacgaatcgccgccagtgggctttttagctcatgagttaatgcgtaaacatactgctcaata                          <  2:1330164‑M2/100‑73 (MQ=255)
                                                                        gTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGt                          <  1:3113/100‑1 (MQ=255)
                                                                         tGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTa                         >  1:515005/1‑100 (MQ=255)
                                                                         tGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTa                         <  2:1464964/100‑1 (MQ=255)
                                                                          ggAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAg                        <  1:1876516/100‑1 (MQ=255)
                                                                          ggAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAg                        <  2:1807596/100‑1 (MQ=255)
                                                                           gAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGa                       >  2:222405/1‑100 (MQ=255)
                                                                            aGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGaa                      >  2:469871/1‑100 (MQ=255)
                                                                              cggcggTGATTTTACGCGAAGGTCCGCCGCCGGCAGTGGTGGATCGGTTTAATGACTACCTTCTGACGCAATATGCGCGTATGCAGGCATTGGTAGAAAc                    >  2:106657/1‑100 (MQ=255)
                                                                               ggcggAAATTTTACGCGAAGGtccgccgctccacgaatcgccgccagtaggctttttagctcatgagttaatgcgtaaacatactgctcaatatagtttt                   <  1:859782‑M2/100‑80 (MQ=255)
                                                                               ggcggAAATTTTACGCGAAGGTCCGCCGCCGGATGTGGTGGTTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACg                   <  1:847614/100‑1 (MQ=255)
                                                                               ggcggAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACg                   >  2:353931/1‑100 (MQ=255)
                                                                               ggcggAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACg                   <  2:1379147/100‑1 (MQ=255)
                                                                                gcggCAATTTTACGCGAAGGTCAGCCGCCGGAAGTGGTGGCTCGTTTTCCTGACAACGTTCTGACGCATCATGCGTGTGTGCAGGCATTGGTa                         >  2:2853404/1‑93 (MQ=255)
                                                                                 cggAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTggagatcggaag                 >  1:2827824/1‑90 (MQ=255)
                                                                                 cggAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGtt                 <  1:1463133/100‑1 (MQ=255)
                                                                                  ggAAATTTTACGCGAAGGTCCTCCGCCGGATGTGGTTGCTCGTTTTGCTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGtt                 <  2:2053197/99‑1 (MQ=255)
                                                                                  ggAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTta                <  1:2965610/100‑1 (MQ=255)
                                                                                  ggAAATATTACGGGAAGGTCCGCCGACGGAAGTGGTGGTTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGAAGGCATTGGTAGAAAc                    <  2:356468/96‑1 (MQ=255)
                                                                                   gAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTtac               <  1:1552166/100‑1 (MQ=255)
                                                                                   gAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTtac               <  1:204678/100‑1 (MQ=255)
                                                                                    aaaTTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTtact              >  1:1747724/1‑100 (MQ=255)
                                                                                       ttttACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACg           >  1:2828801/1‑100 (MQ=255)
                                                                                        tttACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGc          <  1:2607637/100‑1 (MQ=255)
                                                                                        tttACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTAGTAGAAACGTTACTACGc          >  1:1319942/1‑100 (MQ=255)
                                                                                         atACGCGAAGGTCCCCCGCCGGAACTGGTGGCTCGTTTTACTGATTTCATTTTGCCGCAAATTTCTTGTTTGTATGCATTGGTAGAAACGTtactat            <  2:244667/96‑2 (MQ=255)
                                                                                           aCGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAg       <  2:2286651/100‑1 (MQ=255)
                                                                                            cgcgAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAgg      <  1:1950858/100‑1 (MQ=255)
                                                                                             gcgAAGGTCCGCAGCCGGAAGTGGTGGCTCGTTTTACTGTCAATATGCAGACTCATAATGCGCGTATGCAGGCACTGGTAGAAACGGGACTACGCCAGGc     <  1:3033897/100‑1 (MQ=255)
                                                                                              cgAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATCCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCa    >  1:1195683/1‑100 (MQ=255)
                                                                                                aaGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAg  <  2:1014997/100‑1 (MQ=255)
                                                                                                   |                                                                                                
AAGGGAAAAACTATATTGAGCAGTATGTTTACGCATTAACTCATGAGCTAAAAAGCCCACTGGCGGCGATTCGTGGAGCGGCGGAAATTTTACGCGAAGGTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAG  >  NC_000913/4637447‑4637642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.