| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2304653 | 37 (0.340) | 30 (0.300) | 9/164 | NT | 63.8% | noncoding (237/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2304669 | 0 (0.000) | noncoding (253/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
CGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTG > NC_000913/2304570‑2304763 | cGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgccgc < 2:2134656/100‑1 (MQ=32)cGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgccgc < 2:2542002/100‑1 (MQ=32)cGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTACTCCACCCCGTAGGTCGGATAAGGCGGTTAcgccgc > 2:1534553/1‑100 (MQ=17) gCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTAcgccgc > 2:2182319/1‑99 (MQ=31) gCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCa > 2:2819543‑M2/1‑99 (MQ=255) ccGCGCCGGTTTTCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCa > 1:2734367‑M2/1‑97 (MQ=255) ccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatc > 1:1359399‑M2/1‑97 (MQ=255) ccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatc < 1:1794304‑M2/100‑4 (MQ=255) cGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCCCCCCGTAGGTCGGATAAGGCGGTTGCGCCCCatac < 2:1638552‑M2/100‑5 (MQ=255) cGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatcc > 1:2508156‑M2/1‑96 (MQ=255) cGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatcc < 2:1811160‑M2/100‑5 (MQ=255) cGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatcc > 1:2563038‑M2/1‑96 (MQ=255) cGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatcc < 1:800362‑M2/100‑5 (MQ=255) cGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGCGACATGCTCCACCGCGTAGGTCGGATAAGGCGGTTACGACACatcc < 2:599852‑M2/100‑5 (MQ=255) cGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTGATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatcc > 2:1593684‑M2/1‑96 (MQ=255) gtgccGGTTGCCTGTTGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccg > 1:802674‑M2/3‑95 (MQ=255) gAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTGGGATAAGGCGGTTACGCCGCatccg < 2:2708896‑M2/100‑6 (MQ=255) aGCCGGTTGCCTGATGCGACGCTGGCGCGTTTTATCAGGCCTACACCGCTGTGAAGTGATCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccga > 1:656364‑M2/1‑94 (MQ=255) aGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccga > 1:2914870‑M2/1‑94 (MQ=255) aGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccga > 1:407979‑M2/1‑94 (MQ=255) ggcggTTGCCTGATGCGGCGCGGGCGCGTCTTATCAGGGCTACACCGCTGTGAAGTGCTTCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccgac > 2:1642999‑M2/3‑93 (MQ=255) gCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccgac > 1:1043390‑M2/1‑93 (MQ=255) gCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccgac > 2:2621584‑M2/1‑93 (MQ=255) gCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccga < 2:441485‑M2/99‑7 (MQ=255) gCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatcccac < 2:2211245‑M2/100‑8 (MQ=255) gCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAAGCGGTTACGCCGCatccaac < 1:2029413‑M2/100‑8 (MQ=255) ggcgcTGGCGCGTATTATCAGGCCTACACCGATGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCatccgacctacggggtggagcac < 1:2044607‑M2/98‑24 (MQ=255) gTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtc < 2:1142170‑M2/100‑62 (MQ=255) gCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcaaagcggtgtaggcctgataagacgcgccagcgtcgc < 1:1151203‑M2/100‑64 (MQ=255) tCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCatccgtcctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcat > 1:1142181‑M2/1‑35 (MQ=255) gcaCCCCGTAGGTCAGACAAGGCGGTCACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatc > 2:441039‑M2/2‑34 (MQ=255) aGGTTGGATAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccg < 1:1441653‑M2/100‑76 (MQ=255) aGGTTGGATAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccg < 1:2126771‑M2/100‑76 (MQ=255) aGGTCGGATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccg < 1:497646‑M2/100‑76 (MQ=255) gTTGGATAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggc < 1:196474‑M2/100‑78 (MQ=255) gTTGGATAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggc < 2:1069887‑M2/100‑78 (MQ=255) gTTGGATAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcatgataagacgcgccagcgtcgcatcaggcaaccggc < 1:2130685‑M2/100‑78 (MQ=255) gTCGGATGAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataaaacgcgccagcgtcgcatcaggcaaccggc < 1:1594479‑M2/100‑78 (MQ=255) gTCGGATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggc < 1:2400897‑M2/100‑78 (MQ=255) gTCGGATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggc < 1:1522404‑M2/100‑78 (MQ=255) gTCGGATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggc < 2:2787291‑M2/100‑78 (MQ=255) tggaTAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctt < 1:1534571‑M2/99‑80 (MQ=255) ngaTAAGGCGGTTACGCCGCatccaacctacggggtggagcccttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcacgcaacc < 2:2453184‑M2/93‑75 (MQ=255) ggATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttg < 1:1248807‑M2/100‑81 (MQ=255) ggATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcg < 1:2413178‑M2/100‑81 (MQ=255) ggATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcg < 2:184824‑M2/100‑81 (MQ=255) ggATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcg < 1:2968328‑M2/100‑81 (MQ=255) ggATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcgatgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcg < 1:2382400‑M2/100‑81 (MQ=255) ggATAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttg < 1:1705223‑M2/100‑81 (MQ=255) ggATAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttg < 1:1210188‑M2/100‑81 (MQ=255) ggATAAGGCGGTTACGCCGCatccaacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttg < 1:683069‑M2/100‑81 (MQ=255) gATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgg < 2:239542‑M2/100‑82 (MQ=255) gATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgg < 2:2180606‑M2/100‑82 (MQ=255) gATAAGGCGGTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgg < 2:962596‑M2/100‑82 (MQ=255) gtacgctcctcatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggc > 2:2828494‑M2/8‑11 (MQ=255) ggTTACGCCGCatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggcgttgga < 1:1743533‑M2/100‑90 (MQ=255) cgccgtatccgacctacggggtggaacacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggcgttggatgtcg > 2:683065‑M2/1‑6 (MQ=255) | CGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTG > NC_000913/2304570‑2304763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |