| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2304654 = | NA (NA) | 8 (0.080) | 4/164 | NT | 100% | noncoding (238/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 2304670 = | 0 (0.000) | noncoding (254/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
CCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG > NC_000913/2304573‑2304769 | ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc < 1:320974‑M2/3‑1 (MQ=255)ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 2:2154351‑M2/98‑100 (MQ=255)ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 1:2979529‑M2/98‑100 (MQ=255)ggagcacttcacagcggtgtaggcctgataagacgcaccagcgtcgcatcaggcaaccggcttgggcattagatgtcggatgcggcgtaaccgccttATc > 1:2146677‑M2/98‑100 (MQ=255) gagcacttcacagcggtgtagtcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc < 1:1621728‑M2/4‑1 (MQ=255) agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc > 1:1804194‑M2/96‑98 (MQ=255) gcacttcgcagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa < 2:2837750‑M2/6‑1 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa > 1:1815983‑M2/95‑100 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa > 1:1872578‑M2/95‑100 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa > 1:2064132‑M2/95‑100 (MQ=255) gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcagcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg < 2:1344453‑M2/5‑1 (MQ=255) gcacttcacagcggggtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa < 1:2227885‑M2/6‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc < 2:1665895‑M2/7‑1 (MQ=255) cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggcgttagatgtcggatgcggcgtaaccgccttATCAGAc > 1:1123478‑M2/94‑100 (MQ=255) acttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAtccc > 2:1503435‑M2/93‑96 (MQ=255) cttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc > 2:2013292‑M2/92‑98 (MQ=255) cttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATACGAc > 2:2681319‑M2/92‑98 (MQ=255) gatctatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtg < 2:1552866‑M2/70‑1 (MQ=255) gatgtcggatgcggcgtaaccgccttATCCGACCTCTAACGCCCAAACCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa > 1:601709‑M2/27‑100 (MQ=255) gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGAGCGTCTTATCAGGCCTACACCGCTGTGaa > 1:1190746‑M2/27‑100 (MQ=255) atgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAg > 1:681615‑M2/26‑100 (MQ=255) atgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGAgaac > 1:1552884‑M2/26‑99 (MQ=255) atgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTACCTGATGCGACGATGGCACATCTTATCAGACCTACACCGCTGTGaa > 1:130229‑M2/26‑99 (MQ=255) tgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAg > 1:2123109‑M2/25‑99 (MQ=255) gtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCATACCTACACCGCTGTGAAg > 1:630261‑M2/24‑98 (MQ=255) ATCCGATATCTAACGCCCAAGCCGGTTGCCTTATGCTACGCTGGCTCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg < 1:2538624‑M2/100‑1 (MQ=255) ATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg < 1:2117422‑M2/100‑1 (MQ=255) ATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg < 2:2842687‑M2/100‑1 (MQ=255) | CCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG > NC_000913/2304573‑2304769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |