Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 190,553 Δ14 bp coding (680‑693/726 nt) rpsB → 30S ribosomal subunit protein S2

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19055211 (0.140)57 (0.720) 47/196 0.9 84.5% coding (679/726 nt) rpsB 30S ribosomal subunit protein S2
?NC_000913 190567 = 10 (0.130)coding (694/726 nt) rpsB 30S ribosomal subunit protein S2

GACGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/190453‑190552
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  NC_000913/190567‑190665
                                                                                                                                                                                                       
GACGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTC                                                                                                     <  2:866147/100‑1
    GTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGG                                                                                                 <  2:924498/100‑1
        TGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGA                                                                                             >  2:720512/1‑100
        TGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGA                                                                                             <  2:1807074/100‑1
          ACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAG                                                                                           <  1:669880/100‑1
           CTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGA                                                                                          >  2:913587/1‑100
                  ATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTC                                                                                   <  2:1081467/100‑1
                    CCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGT                                                                                 >  1:867973/1‑100
                     CCGGGTTACTACGACGCAATCCGGGCTGGGACCCAGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTn                                                                                <  1:1727715/100‑2
                     CCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTA                                                                                <  2:554628/100‑1
                     CCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTA                                                                                <  1:1051577/100‑1
                      CGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAG                                                                               <  2:1486472/100‑1
                      CGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAG                                                                               >  1:102847/1‑100
                        GGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAA                                                                             >  2:1664966/1‑100
                         GTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAG                                                                            <  2:321596/100‑1
                         GTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAG                                                                            <  2:1620831/100‑1
                          TAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGC                                                                           <  1:1271233/100‑1
                          TAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGAGGAAGAAAGCTTCGTAGAAGC                                                                           >  1:254933/1‑100
                            ACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTG                                                                         <  2:977226/100‑1
                             CGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGAACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTACGTAGAAGCTGA                                                                        >  2:1935368/1‑100
                                   CGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGTCGTTCTCCAGTCGGAAGAAAGCTTCGTACAAGCTGAGTAAca                                                                  <  2:1313358/100‑3
                                   CGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATA                                                                  >  1:675290/1‑100
                                       ATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGC                                                              <  1:562143/100‑1
                                         CCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTT                                                            >  1:1391444/1‑100
                                          CGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTG                                                           >  1:473975/1‑100
                                           GTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGA                                                          <  2:1902986/100‑1
                                               TGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAAC                                                      <  1:1943838/100‑1
                                                  GACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCC                                                   <  2:1222921/100‑1
                                                   ACCCTGTGCCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCC                                                  <  2:1376055/100‑1
                                                   ACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCC                                                  >  2:679715/1‑100
                                                     CCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCC                                                >  1:1078641/1‑100
                                                      CTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCA                                               <  1:1787870/100‑1
                                                         TACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAA                                            >  1:39372/1‑100
                                                         TACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAA                                            <  1:720511/100‑1
                                                         TACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAA                                            >  1:738437/1‑100
                                                         TACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAA                                            <  2:1236103/100‑1
                                                          ACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAAT                                           >  2:1747703/1‑100
                                                           CCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATA                                          >  2:7042/1‑100
                                                               GGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTC                                      <  1:164439/100‑1
                                                                  GCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAG                                   >  1:773125/1‑100
                                                                      TTGCTGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGC                               <  1:952326/100‑1
                                                                          TGCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAA                           >  2:304179/1‑100
                                                                           GCAACCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAA                          >  1:1456774/1‑100
                                                                               CCGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCG                      >  1:1898751/1‑100
                                                                               CCGTACGTGAAGGCCGTTCTCCAGGAGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCG                      <  2:254935/100‑1
                                                                                CGTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAAAAAGGCGG                     <  2:1391452/100‑1
                                                                                 GTACGTGAAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGC                    <  2:191985/100‑1
                                                                                        AAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAACATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCG             <  2:1842817/100‑1
                                                                                        AAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCG             >  1:624549/1‑100
                                                                                        AAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCG             <  2:84938/100‑1
                                                                                        AAGGCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCG             <  1:1520130/100‑1
                                                                                           GCCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGA          <  1:1935616/100‑1
                                                                                           GCCGTTCTCCAGGCGGAAGAAAGCGTCTTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGA          <  1:1935355/100‑1
                                                                                            CCGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAA         <  2:1727590/100‑1
                                                                                             CGTTCTCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAAT        >  2:1130623/1‑100
                                                                                                  TCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCG   >  2:249933/1‑100
                                                                                                  TCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCG   >  2:1421664/1‑100
                                                                                                  TCCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCG   <  1:716790/100‑1
                                                                                                   CCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  2:418749/1‑100
                                                                                                   CCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  <  1:573717/100‑1
                                                                                                                                                                                                       
GACGGTGTTGACTTCGTTATCCCGGGTAACGACGACGCAATCCGTGCTGTGACCCTGTACCTGGGCGCTGTTGCTGCAACCGTACGTGAAGGCCGTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/190453‑190552
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGCGGAAGAAAGCTTCGTAGAAGCTGAGTAATAAGGCTTGATAACTCCCCCAAAATAGTTCGAGTTGCAGAAAGGCGGCAAGCTCGAGAATTCCCGG  >  NC_000913/190567‑190665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.