New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 4526710 = | 83 (0.910) | 4 (0.050) | 4/162 | NT | 5.2% | coding (179/783 nt) | sgcR | putative DNA‑binding transcriptional regulator |
? | NC_000913 | 4526743 = | 69 (0.830) | coding (146/783 nt) | sgcR | putative DNA‑binding transcriptional regulator | |||||
Rejected: Frequency below cutoff threshold. |
CAGCAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4526816‑4526710 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctggaTACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGCTCCATGGCCTGCTGTGTGGAGAGGTGACGATGTTGCCAC > NC_000913/4526743‑4526841 CAGCAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTT < 2:2203752/100‑1 CAGCAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTT > 1:2332871/1‑100 GCAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGC > 2:2505681/1‑100 GCAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGC > 2:1547090/1‑100 GCAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTG < 1:1217333/99‑1 CAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCC < 2:1971731/100‑1 CAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCC < 1:824470/100‑1 AGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCCT > 1:405899/1‑100 GGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCCTG > 2:2537184/1‑100 GCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCCTGG < 2:114067/100‑1 CCATGGAGCTTTTTGGCTGTGCGTAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGACACGGTTGCCT < 2:737897/97‑1 CAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCCTGGATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAA > 1:702158/1‑100 ACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCCTGGATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGC > 1:602876/1‑100 TATCCAGGCATGATCCGCGGTCACGGTTGCCTGGATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGCTCCAT > 1:21642/1‑100 ATCCAGGCATGATCCGCGGTCACGGTTGCCTGGATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCACAAAGCTCCATG > 1:1188554/1‑100 CCTGGATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGCTCCATGGCCTGCTGTGTGGAGAGGTGACGATGTn < 2:1160578/100‑2 caGGATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGCTCCATGGCCTGCTGTGTGGAGAGGTGACGATGTTG < 1:1322445/98‑1 CTGGATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGCTCCATGGCCTGCTGTGTGGAGAGGTGACGATGTTG > 1:1977933/1‑100 ATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGCTCCATGGCCTGCTGTGTGGAGAGGTGACGATGTTGCCAC < 1:2092933/100‑1 ATACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGCTCCATGGCCTGCTGTGTGGAGAGGTGACGATGTTGCCAC < 1:202449/100‑1 CAGCAGGCCATGGAGCTTTTTGGCTATGCGGAAGCGACTGTCCGTCGTGATTTCCAGTATATTGTCAACCAGTATCCAGGCATGATCCGCGGTCACGGTTGCCTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4526816‑4526710 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctggaTACTGGTTGACAATATACTGGAAATCACGACGGACAGTCGCTTCCGCATAGCCAAAAAGCTCCATGGCCTGCTGTGTGGAGAGGTGACGATGTTGCCAC > NC_000913/4526743‑4526841 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |