| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 683435 | 72 (0.790) | 16 (0.190) | 12/162 | NT | 18.7% | intergenic (‑42/+42) | hscC/rihA | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor/ribonucleoside hydrolase 1 |
| ? | NC_000913 | = 683457 | 74 (0.890) | intergenic (‑64/+20) | hscC/rihA | Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor/ribonucleoside hydrolase 1 | |||||
GACGGCAATTAAACTATTGGTAGTACCGAGATCGATACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/683331‑683435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattaagaTCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCGCCATTGGTATCGATC < NC_000913/683457‑683360 GACGGCAATTAAACTATTGGTAGTACCGAGATCGATACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGAT > 2:83401/1‑100 ACGGCAATTAAACTATTGGTAGTACCGAGATCGATACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATT < 1:229947/100‑1 CGGCAATTAAACTATTGGTAGTACCGAGATCGATACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTA > 1:185142/1‑100 GCAATTAAACTATTGGTAGTACCGAGATCGATACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAG < 1:1521657/100‑1 GCAATTAAACTATTGGTAGTACCGAGATCGATACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAG > 2:344330/1‑100 CAATTAAACTATTGGTAGTACCGAGATCGATACCAATGACGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGA > 2:1585532/1‑100 ATACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAAT < 1:710764/100‑1 TACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATC < 1:2138576/100‑1 CAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGT < 1:550294/100‑1 CAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGT < 2:785262/100‑1 CAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGT < 2:365002/100‑1 AATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTT < 1:2377054/100‑1 ATGGCGAGTTCTGCATTATACATTGCATTTATATGTTTAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTT < 2:1045536/100‑1 GCGAGTTCTGCATTATCCATTGCATTTATATCTGGAAAGAAAAAGAGATAAACAGATTAAGATCACCGCGCGTGACCTGGGTGGTCTTAATCTGTTTATC < 2:955701/100‑1 CGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTAT < 2:202067/98‑1 AGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCT < 1:2025296/100‑1 AGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCT < 2:364093/100‑1 AGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTC < 2:247272/99‑1 TCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTT < 2:558034/100‑1 TCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTT < 1:1609913/100‑1 CATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGATCACCACGCTTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAG < 2:1080832/98‑1 AAAAAGAGATAAACAGATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAG < 1:2333136/100‑1 GATTAAGATCACTACGCGTTACTTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCG < 2:1765380/91‑1 GATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCGCCATTGGTA > 2:1116991/1‑100 ATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCGCCATTGGTgt < 2:663587/100‑3 ATTAAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCGCCATTGGTAT < 1:786020/100‑1 AAGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCGCCATTGGTATCGA > 2:352136/1‑100 AGATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCGCCATTGGTATCGAT < 1:1471075/100‑1 aATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCGCCATTGGTATCGATC > 2:2320921/2‑100 GATCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGATCTCGCCATTGGTATCGATC > 2:1974445/1‑100 GACGGCAATTAAACTATTGGTAGTACCGAGATCGATACCAATGGCGAGTTCTGCATTATCCATTGCATTTATATCTTGAAAGAAAAAGAGATAAACAGATTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/683331‑683435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattaagaTCACCACGCGTTACCTGGGTGGTCTTAATCTGTTTATCTCTTTTTCTTTCAAGATATAAATGCAATGGATAATGCAGAACTCGCCATTGGTATCGATC < NC_000913/683457‑683360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |