New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2888334 =	NA (NA)	10 (0.120)	6/164	NT	NA	noncoding (1/37 nt)	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2888367 =	NA (NA)					noncoding (34/37 nt)	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences

GCGGGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2888437‑2888334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCA  >  NC_000913/2888367‑2888465                                                                                                                                                                                                             ggGGGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATC                                                                                                         >  1:1833018/3‑100  CGGGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCA                                                                                                        <  2:1172536/100‑1    GGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGG                                                                                                      <  1:1464060/100‑1     GCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGC                                                                                                     >  2:464105/1‑100     GCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGC                                                                                                     <  2:2507877/100‑1                                                                   TGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAAT                                       >  1:2442534/1‑100                                                                   TGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAAT                                       >  1:94506/1‑100                                                                    GTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAAgg                                      >  1:1704770/1‑98                                                                      AGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGAT                                    >  1:1018135/1‑100                                                                      AGGCCTGATAAGAACGCGGGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGA                                     >  2:1103735/1‑99                                                                       GGCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCAGGCGGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATG                                   >  2:2003290/1‑100                                                                        GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGCCTGATGC                                  >  2:1699886/1‑100                                                                        GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGC                                  >  1:143418/1‑100                                                                        GCCTGATAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGC                                  >  1:1985483/1‑100                                                                              TAAGAACGCGTGAGCGTCGCATCAGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCAC                            <  2:94505/100‑1                                                                                                     AGGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCT     <  2:1795623/100‑1                                                                                                      GGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGTCCGCACGCACCGTAAAGTCGCCGAAGCCTT    >  1:419021/1‑100                                                                                                      GGCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTT    >  1:1139369/1‑100                                                                                                       GCCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTC   <  2:1698823/100‑1                                                                                                        CCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCA  >  1:1913615/1‑100                                                                                                                                                                                                             GCGGGCATCATTCGCCCGGTGCTCGATCCGGCGCGTGATTTGTGGGATTAACCATCAGCCCGGTCTTGTAGGCCTGATAAGAACGCGTGAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2888437‑2888334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAGACCGGGCTGATGGTTAATCCCACAAATCACGCGCCGGATCGAGCACCGGGCGAATGATGCCCGCACGCACCGTAAAGTCGCCGAAGCCTTCA  >  NC_000913/2888367‑2888465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.