New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4541922 =101 (1.110)8 (0.090) 6/170 NT 7.9% intergenic (+363/‑115) fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
?NC_000913 4541952 = 91 (1.040)intergenic (+393/‑85) fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
Rejected: Frequency below cutoff threshold.

Only 100 of 120 total aligned reads displayed.

TCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGT  >  NC_000913/4541855‑4542051
                                                                                                 |                                                                                                   
tcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCttt                                                                                                   <  2:44530/100‑1 (MQ=255)
  aaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCttttt                                                                                                 >  1:712834/1‑100 (MQ=255)
   gatatatttgaatgaatacctataggaaacctcaatcggtcaaaattatcacaatagataaaaagataaccacacacggagtgatgtggttatcttttt                                                                                                 >  2:1045938‑M2/95‑99 (MQ=255)
    tGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTAt                                                                                               <  2:842123/100‑1 (MQ=255)
    tGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTAt                                                                                               <  1:1230643/100‑1 (MQ=255)
    tGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTAt                                                                                               >  1:1263936/1‑100 (MQ=255)
     tatatttgaatgaatacctataggaaacctcaatcggtcaaaattagcccaatagataaaaaGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATc                                                                                              >  2:191232‑M1/63‑100 (MQ=255)
      atatttgaatgaatacctataggaaacctcaatcggtcaaaattagcccaatagataaaaaGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCt                                                                                             >  1:107654‑M1/62‑100 (MQ=255)
       aaaTAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTa                                                                                            <  2:1020656/100‑1 (MQ=255)
        aaTAGATGTTGTCGCATCAGTGATATTTTATTTTTGTATGATGTTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTAt                                                                                           >  1:1736295/1‑100 (MQ=255)
        aaTAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTAt                                                                                           >  1:2487654/1‑100 (MQ=255)
           aGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTgg                                                                                        <  1:1419172/100‑1 (MQ=255)
            gaatgaatacctataggaaacctcaatcggtcaaaattagcccaatagataaaaaGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTggg                                                                                       >  1:102274‑M1/56‑100 (MQ=255)
            gATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTggg                                                                                       <  2:584769/100‑1 (MQ=255)
             aTGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACCTCCCTCCGTGTGTGGTTATCTTTTTATCTATTGGGc                                                                                      <  1:1274588/100‑1 (MQ=255)
                 tgtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAt                                                                                  >  1:1000270/1‑100 (MQ=255)
                  gtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAtt                                                                                 <  2:176929/100‑1 (MQ=255)
                    cacaTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAtttt                                                                               <  2:90701/100‑1 (MQ=255)
                     acaTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTg                                                                              <  2:658999/100‑1 (MQ=255)
                     acaTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTg                                                                              <  1:567730/100‑1 (MQ=255)
                       aTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAc                                                                            >  1:1967087/1‑100 (MQ=255)
                       aTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAc                                                                            <  1:769043/100‑1 (MQ=255)
                        tctgTGATATTTTATTTTTGTATGATATTTATTGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTCTCTATTGCGCTAATTTTGAcc                                                                           <  2:755509/97‑1 (MQ=255)
                        tCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGTCTGTTAGCCACAGCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAc                                                                            <  2:2438090/99‑1 (MQ=255)
                        tCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAcc                                                                           <  1:144340/100‑1 (MQ=255)
                        tCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAcc                                                                           <  1:1241115/100‑1 (MQ=255)
                        tCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAcc                                                                           <  2:1792990/100‑1 (MQ=255)
                        tCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAcc                                                                           <  1:2401767/100‑1 (MQ=255)
                          aGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGa                                                                         >  1:1860939/1‑100 (MQ=255)
                           gTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGAt                                                                        >  2:2248580/1‑100 (MQ=255)
                               tattttatttTTGTATGATATTTAATGTAATTGACTGAGAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAg                                                                    <  2:1061893/100‑1 (MQ=255)
                                attttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAg                                                                    >  2:1509479/1‑99 (MQ=255)
                                attttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTACGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAgg                                                                   >  2:1028958/1‑100 (MQ=255)
                                 ttttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGt                                                                  >  1:2382506/1‑100 (MQ=255)
                                 ttttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGt                                                                  >  1:2415878/1‑100 (MQ=255)
                                   ttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGttt                                                                <  1:1412618/100‑1 (MQ=255)
                                     attttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTcc                                                              >  2:406940/1‑100 (MQ=255)
                                     attttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTcc                                                              >  2:469412/1‑100 (MQ=255)
                                     attttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTcc                                                              <  2:443842/100‑1 (MQ=255)
                                      tccgtcaaaattagcccaatagataaaaaGATATCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGACTAATTTTGACCGATTGAGGTTTCCt                                                             >  2:672824‑M1/30‑100 (MQ=255)
                                       ttttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCta                                                            >  1:64575/1‑100 (MQ=255)
                                       ttttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCta                                                            <  2:1474528/100‑1 (MQ=255)
                                       ttttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCta                                                            >  1:685346/1‑100 (MQ=255)
                                        tttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCtat                                                           <  2:2382491/100‑1 (MQ=255)
                                           gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                        <  1:1291181/100‑1 (MQ=255)
                                           gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                        <  1:18960/100‑1 (MQ=255)
                                            tATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGt                                                       <  1:34794/100‑1 (MQ=255)
                                              tGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTat                                                     <  2:809049/100‑1 (MQ=255)
                                              tGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTat                                                     >  1:2093620/1‑100 (MQ=255)
                                                 tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattca                                                  <  2:1521606/100‑1 (MQ=255)
                                                    ttAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattcattc                                               <  2:685339/100‑1 (MQ=255)
                                                    cccaatagataaaaagataaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattcattc                                               >  1:102274‑M2/46‑100 (MQ=255)
                                                     tAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTAttcattca                                              <  2:436763/100‑1 (MQ=255)
                                                     tAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTAttcattca                                              <  1:1849500/100‑1 (MQ=255)
                                                      aaTGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCaa                                             <  1:2172246/100‑1 (MQ=255)
                                                      aaTGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCaa                                             <  1:1024955/100‑1 (MQ=255)
                                                        tGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAat                                           <  1:663036/100‑1 (MQ=255)
                                                         tagataaaaagataaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAata                                          >  1:568657‑M2/41‑100 (MQ=255)
                                                           gataaaaagataaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatata                                        >  1:752083‑M2/39‑100 (MQ=255)
                                                           gataaaaagataaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatata                                        >  2:191232‑M2/39‑100 (MQ=255)
                                                            aTTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatatat                                       <  1:469416/100‑1 (MQ=255)
                                                            aTTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatatat                                       >  1:838078/1‑100 (MQ=255)
                                                             ttGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtc                                      >  1:2162971/1‑100 (MQ=255)
                                                             ttGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtc                                      <  1:2104950/100‑1 (MQ=255)
                                                             ttGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtc                                      <  1:841301/100‑1 (MQ=255)
                                                              aaaaaGATAACCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGTGATAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtc                                      >  2:1045938‑M1/6‑99 (MQ=255)
                                                                aCTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCa                                   <  2:2310159/100‑1 (MQ=255)
                                                                 cTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAg                                  <  2:1251390/100‑1 (MQ=255)
                                                                   GATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGtt                                <  2:856162‑M1/100‑1 (MQ=255)
                                                                    ATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTa                               <  1:1648802‑M1/100‑1 (MQ=255)
                                                                      AGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                             >  2:64574‑M1/1‑100 (MQ=255)
                                                                      AGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                             >  2:1345348‑M1/1‑100 (MQ=255)
                                                                       gCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGa                            >  2:525073/1‑100 (MQ=255)
                                                                        ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                             <  2:1345120/98‑1 (MQ=255)
                                                                        ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAg                           <  1:235656/100‑1 (MQ=255)
                                                                        ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAg                           >  2:238639/1‑100 (MQ=255)
                                                                        ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATCCAAATATATCTCAGTTAGGAg                           >  2:1973002/1‑100 (MQ=255)
                                                                        ccACATCACTCCGCGTGTGCTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATACATTCAAATATCTCCCAGTTACGa                            >  2:751458/1‑99 (MQ=255)
                                                                              cACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtactac                     >  2:1882554/1‑100 (MQ=255)
                                                                                cTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                   >  2:1497912/1‑100 (MQ=255)
                                                                                 tCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATACGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                   <  2:1506017/99‑1 (MQ=255)
                                                                                   cGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                <  2:874582/100‑1 (MQ=255)
                                                                                   cGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                >  1:2172069/1‑100 (MQ=255)
                                                                                     tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              <  2:2278560/100‑1 (MQ=255)
                                                                                     tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              <  2:2027471/100‑1 (MQ=255)
                                                                                     tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              <  1:776551/100‑1 (MQ=255)
                                                                                     tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              >  1:443362/1‑100 (MQ=255)
                                                                                      gtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGa             >  1:1810594/1‑100 (MQ=255)
                                                                                      gtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGa             <  2:1930927/100‑1 (MQ=255)
                                                                                      gtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGa             <  1:406944/100‑1 (MQ=255)
                                                                                       tgtgGTTATCTTTTTATCTATTTGGCTAATTTTGACAGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              <  2:568515/98‑1 (MQ=255)
                                                                                       tgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAg            <  1:2412869/100‑1 (MQ=255)
                                                                                       tgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAg            <  2:800451/100‑1 (MQ=255)
                                                                                       tgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAg            <  2:134321/100‑1 (MQ=255)
                                                                                       tgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAg            <  1:1509490/100‑1 (MQ=255)
                                                                                           gTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTaaa        <  1:1329107/100‑1 (MQ=255)
                                                                                               tcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtc    >  2:937879‑M2/3‑100 (MQ=255)
                                                                                                 tttttATCTATTGGGCTAATTTTGGCCGATTGAGGTTTCCTATAGTTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcgt  <  2:1274067/100‑1 (MQ=255)
                                                                                                 tttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcgt  <  1:1976711/100‑1 (MQ=255)
                                                                                                 tttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcgt  >  1:1891267/1‑100 (MQ=255)
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TCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGT  >  NC_000913/4541855‑4542051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.