BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4636885	85 (0.930)	6 (0.070)	5/168	NT	6.5%	coding (190/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
*	?	NC_000913	= 4636902	92 (1.070)	6 (0.070)	5/168	NT	6.5%	coding (207/1425 nt)	creC	sensory histidine kinase in two‑component regulatory system with CreB or PhoB
Rejected: Frequency below cutoff threshold.

Only 100 of 114 total aligned reads displayed.

AGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGC  >  NC_000913/4636803‑4637001

agCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAg                                                                                                     <  2:172346/100‑1 (MQ=255)

 gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGg                                                                                                    <  1:1204909‑M2/100‑2 (MQ=255)

 gCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGg                                                                                                    >  2:34461‑M2/1‑99 (MQ=255)

  ccgatctggggacgttgaTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgc                                                                                                   >  1:41087‑M2/8‑98 (MQ=255)

      ggAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGttt                                                                                               <  2:1139503/100‑1 (MQ=255)

       gAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTa                                                                                              >  1:239748/1‑100 (MQ=255)

       gAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGATGGCGCGTCCCGGTGTGCTCTCTGGGGACACAACGCATGGGCAACTGGCGCAGGCGTTTa                                                                                              <  2:853071/100‑1 (MQ=255)

         ggggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGgcagatcgg                                                                                            <  2:41086‑M2/100‑10 (MQ=255)

          gggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATc                                                                                           >  2:2275022/1‑100 (MQ=255)

          gggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATc                                                                                           >  1:276329/1‑100 (MQ=255)

           ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCa                                                                                          >  2:924164/1‑100 (MQ=255)

           ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCa                                                                                          <  1:2320670/100‑1 (MQ=255)

           ggACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCa                                                                                          >  2:315424/1‑100 (MQ=255)

             aCGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGc                                                                                        <  1:2275036/100‑1 (MQ=255)

              cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                                                                                       >  1:882486/1‑100 (MQ=255)

              cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                                                                                       <  1:1702983/100‑1 (MQ=255)

              cGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCt                                                                                       >  1:2067388/1‑100 (MQ=255)

               gTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTa                                                                                      >  2:1457418/1‑100 (MQ=255)

                 tGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTaca                                                                                    >  1:1668157/1‑100 (MQ=255)

                 tGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTaca                                                                                    <  2:743182/100‑1 (MQ=255)

                  gATCGACGCCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa                                                                                   <  1:2020666/100‑1 (MQ=255)

                  gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa                                                                                   >  2:1690774/1‑100 (MQ=255)

                  gATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaa                                                                                   >  1:1541748/1‑100 (MQ=255)

                   aTCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaac                                                                                  >  2:533080/1‑100 (MQ=255)

                    tCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTacaaca                                                                                 >  2:1891363/1‑100 (MQ=255)

                     cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                                >  1:72779/1‑100 (MQ=255)

                     cGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACAt                                                                                >  2:1903279/1‑100 (MQ=255)

                      gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc                                                                               >  2:1098256/1‑100 (MQ=255)

                      gACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATc                                                                               >  1:108859/1‑100 (MQ=255)

                       acacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCg                                                                              >  1:1553365/1‑100 (MQ=255)

                        cacCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGc                                                                             >  1:1703134/1‑100 (MQ=255)

                         acCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGc                                                                             <  2:2384081/99‑1 (MQ=255)

                          ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGccc                                                                           >  1:780189/1‑100 (MQ=255)

                          ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGccc                                                                           >  1:791419/1‑100 (MQ=255)

                          ccGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGccc                                                                           <  1:924172/100‑1 (MQ=255)

                            gCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGCGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGt                                                                         >  2:1589172/1‑100 (MQ=255)

                              aaCGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGttt                                                                       <  2:108857/100‑1 (MQ=255)

                                cGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTcg                                                                     <  1:1589912/100‑1 (MQ=255)

                                  ttGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGGAGGCGTTTAATCAGCTACAACATCGCCCGTTTcgcg                                                                   <  2:513880/100‑1 (MQ=255)

                                   tGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCgcgc                                                                  <  2:882478/100‑1 (MQ=255)

                                    gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGcc                                                                 >  2:2261679/1‑100 (MQ=255)

                                    gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGcc                                                                 <  1:1702316/100‑1 (MQ=255)

                                    gCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGcc                                                                 <  2:806140/100‑1 (MQ=255)

                                       ggCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAat                                                              >  1:1026822/1‑100 (MQ=255)

                                         cGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAatat                                                            >  1:1503154/1‑100 (MQ=255)

                                              cTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTg                                                       <  2:582693/100‑1 (MQ=255)

                                               tGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTgg                                                      >  1:1107603/1‑100 (MQ=255)

                                               tGGCGCGGCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCCCCAATATCGGTgg                                                      <  2:1584883/100‑1 (MQ=255)

                                                ggCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGc                                                     >  2:260624/1‑100 (MQ=255)

                                                ggCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGc                                                     >  2:1670931/1‑100 (MQ=255)

                                                   gcgTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCAtt                                                  <  2:1541737/100‑1 (MQ=255)

                                                    cgTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTa                                                 <  2:1362882/100‑1 (MQ=255)

                                                      tCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAAc                                               >  2:95824/1‑100 (MQ=255)

                                                        ccGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACaa                                             >  2:2368939/1‑100 (MQ=255)

                                                        ccGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACaa                                             >  1:923113/1‑100 (MQ=255)

                                                         cGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACaaa                                            >  1:1579071/1‑100 (MQ=255)

                                                          gATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAg                                           <  1:2206031/100‑1 (MQ=255)

                                                               gCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTgcgc                                      <  2:1183297/100‑1 (MQ=255)

                                                               gCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTgcgc                                      <  1:783347/100‑1 (MQ=255)

                                                                ctctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCa                                     >  1:2381877/1‑100 (MQ=255)

                                                                 tctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCaa                                    >  1:1381423/1‑100 (MQ=255)

                                                                  ctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAAt                                   <  1:95825/100‑1 (MQ=255)

                                                                  ctctGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAAt                                   >  1:43087/1‑100 (MQ=255)

                                                                    ctGCGGACCCAACGCATGGTCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATg                                  <  1:1105436/99‑1 (MQ=255)

                                                                      ggggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAat                               >  2:1065498/1‑100 (MQ=255)

                                                                       gggACCCAACGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtc                              <  1:396176‑M2/100‑72 (MQ=255)

                                                                       gggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                              <  1:932108/100‑1 (MQ=255)

                                                                       gggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAata                              <  1:502930/100‑1 (MQ=255)

                                                                        ggACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTGTCGCGCCAATATCGGTGGCATTAAGAAAGTACGCAACGAatc                              >  2:1642204/1‑98 (MQ=255)

                                                                         gACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATc                            <  2:1863749/100‑1 (MQ=255)

                                                                          aCCCAACGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccc                           <  1:1257107‑M2/100‑75 (MQ=255)

                                                                           cccAACGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccct                          <  1:775054‑M2/100‑76 (MQ=255)

                                                                            ccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATg                         <  1:1299421/100‑1 (MQ=255)

                                                                            ccAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATg                         >  2:2406074/1‑100 (MQ=255)

                                                                             cAACGCATGGGCAACTGGCGCAGgtgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctcc                        <  2:1095643‑M2/100‑78 (MQ=255)

                                                                             cAACGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctcc                        <  1:2014595‑M2/100‑78 (MQ=255)

                                                                             cAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGt                        >  1:887535/1‑100 (MQ=255)

                                                                             cAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGt                        >  1:247842/1‑100 (MQ=255)

                                                                              agcGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTTCAACATCGGCCGTTGCGGGCCAATGGCGGTGGCATTAACAAAGTGCGCAATGAATATCATg                         <  2:2192194/96‑1 (MQ=255)

                                                                                cGCATGGGCAACTGGCGCAGgcgttgggtccccagagagcaaatcgggacgcgccagctccgccagcaacgttgcggtgtcgatcaacgtcccctccgtt                     <  1:1904187‑M2/100‑81 (MQ=255)

                                                                                cGCATGGGCAACTGGCGCAGGCGTTTAATCGGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCta                     <  2:147775/100‑1 (MQ=255)

                                                                                cGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCta                     >  2:1164735/1‑100 (MQ=255)

                                                                                cGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCta                     <  2:446058/100‑1 (MQ=255)

                                                                                cGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCta                     >  1:2209587/1‑100 (MQ=255)

                                                                                cGCATGGGCAACTGGCGCAGGAGATTAAATAGCTACAACATCGACCGTTTCGCGCCAATATCGTCGGCATCAACAAAGTGCGAAATGACTATCATGTCta                     >  2:2408665/1‑100 (MQ=255)

                                                                                 gCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCtat                    <  1:1026126/100‑1 (MQ=255)

                                                                                 gCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCta                     <  2:147756/99‑1 (MQ=255)

                                                                                  cATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCtata                   >  2:1023718/1‑100 (MQ=255)

                                                                                   aTGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATCTCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTatat                  >  2:830674/1‑100 (MQ=255)

                                                                                   aTGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTatat                  >  1:930256/1‑100 (MQ=255)

                                                                                      ggCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTCACAAAGTGCGCAATGAATATCATGTCTATATGAc               >  2:2414485/1‑100 (MQ=255)

                                                                                       gCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGAcc              >  1:660434/1‑100 (MQ=255)

                                                                                           cTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATg          <  2:2280500/100‑1 (MQ=255)

                                                                                            tGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATgc         <  1:533087/100‑1 (MQ=255)

                                                                                             ggCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATgcg        >  1:467571/1‑100 (MQ=255)

                                                                                             ggCCCACGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATTTCCGTTGCGTTAACAGCGTGCGCAATGAATGTCATGTCTATATGATCAATgc         >  2:2034859/1‑99 (MQ=255)

                                                                                              gcgcAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATgcgc       >  2:400581/1‑100 (MQ=255)

                                                                                              gcgcAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATgcgc       >  2:2444775/1‑100 (MQ=255)

                                                                                                 cAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAgg    <  1:2233955/100‑1 (MQ=255)

                                                                                                   ggCGTTTAATCAGCTACAACATCGCCCTTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGc  <  2:677190/100‑1 (MQ=255)

AGCAACGGAGGGGACGTTGATCGACACCGCAACGTTGCTGGCGGAGCTGGCGCGTCCCGATTTGCTCTCTGGGGACCCAACGCATGGGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCCAATATCGGTGGCATTAACAAAGTGCGCAATGAATATCATGTCTATATGACCGATGCGCAGGGC  >  NC_000913/4636803‑4637001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.