New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 277706	NA (NA)	9 (0.080)	6/164	NT	NA	noncoding (32/67 nt)	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 277737	NA (NA)					noncoding (63/67 nt)	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

CACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/277608‑277706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  <  NC_000913/277737‑277632                                                                                                                                                                                                               CACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTG                                                                                                           >  1:153025/1‑100  ACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGC                                                                                                          >  2:388577/1‑100  ACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTG                                                                                                           <  1:1483219/99‑1    GCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCG                                                                                                        <  2:2563263/100‑1    GCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACACCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCG                                                                                                        <  2:2561369/100‑1     CCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGG                                                                                                       <  2:882108/100‑1     CCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGG                                                                                                       <  2:3353997/100‑1     CCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGG                                                                                                       <  2:2488346/100‑1      CTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGA                                                                                                      <  2:117944/100‑1       TGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGAT                                                                                                     >  2:96636/1‑100                               GCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGC                                                                             <  2:1061956/100‑1                                  AAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAAT                                                                          <  2:2194176/100‑1                                  AAGCTGAGGGTTTATCGGGGCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAAT                                                                          <  1:392623/100‑1                                   AGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATG                                                                         <  2:2331379/100‑1                                   AGCTGAGGGTCTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCTGGATAAGGCGCTTGTGCCGCCATCCGGCAATG                                                                         <  2:2514529/100‑1                                     CTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCC                                                                       <  1:2534601/100‑1                                          GGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATG                                                                  <  1:3370134/100‑1                                           GTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGC                                                                 <  2:2613974/100‑1                                           GTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGC                                                                 <  1:2159761/100‑1                                                                                                    GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGC        >  2:156144/1‑100                                                                                                    GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGC        >  2:2001546/1‑100                                                                                                     CCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCG       >  1:508603/1‑100                                                                                                        GATAAGGCGCTTGTGCCGCCATACGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTT    <  1:288567/100‑1                                                                                                          TAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  >  2:2185422/1‑100                                                                                                                                                                                                               CACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/277608‑277706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATGCGCTGCGCTTATCAGGCCTACAATGAACGATGTAGACCCGATAAACCCTCAGCTTCGCGCTTTT  <  NC_000913/277737‑277632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.