| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1534883 = | NA (NA) | 13 (0.120) | 11/162 | NT | NA | noncoding (1/75 nt) | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 1534913 = | NA (NA) | noncoding (31/75 nt) | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1534988‑1534883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTGC > NC_000913/1534913‑1535011 GCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCA < 2:3047757/100‑1 CCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCAT > 2:2966752/1‑100 GAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCC > 2:387985/1‑100 TGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGC < 2:1221926/100‑1 TGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGC < 2:635209/100‑1 TGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGC < 2:2949482/100‑1 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGCA < 2:3343249/100‑1 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCA > 1:3382050/1‑100 GGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCA > 1:607797/1‑100 CTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATC < 2:1219131/100‑1 GTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTG > 1:3124775/1‑100 TATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGC > 1:3061035/1‑100 CCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCAT > 1:2752017/1‑100 CGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATT > 2:2127099/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTC > 2:730706/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTC > 2:2981788/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTC > 2:1613636/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCACTC > 1:2000529/1‑100 GATAAGGCGTTTCCGCCGCATCCGGCATACATTAGCCCGGTCGTAGACCTGACAGGCGAAGCGCATCAGACAACGGATTCAGAGTTCGATTGCCCAT > 1:1232731/1‑97 GATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCG > 2:101549/1‑100 GCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGA > 1:2483855/1‑100 CGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAA < 1:1219127/100‑1 ATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCG > 1:754099/1‑100 TCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGC < 2:2712380/100‑1 CCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCT > 2:1020356/1‑100 GCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTG < 1:451772/100‑1 GCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTG < 2:3269968/100‑1 GCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTG < 2:3314149/100‑1 GCATACATTAGCCCGGTTGTAGACCGGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGACACAAAATCACCGCTGTG < 1:190111/100‑1 CATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTGC > 2:2448006/1‑100 GCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1534988‑1534883‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCATTCGGCATGAAACAAAATCACCGCTGTGC > NC_000913/1534913‑1535011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |