New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1534883 =NA (NA)13 (0.120) 11/162 NT NA noncoding (1/75 nt) REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1534913 = NA (NA)noncoding (31/75 nt) REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 167 total aligned reads displayed.

TGGATGATGCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCA  >  NC_000913/1534784‑1534982
                                                                                                   |                                                                                                   
gcacagcggtgattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatg                                                                                                     >  2:2448006‑M1/100‑100 (MQ=255)
 ggATGATGCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATTATTTATGTCAGGTTGc                                                                                                    >  1:165916/1‑100 (MQ=255)
 cacagcggtgattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGc                                                                                                    <  2:3314149‑M1/2‑1 (MQ=255)
    agcggtgattttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCgg                                                                                                 >  2:1020356‑M1/96‑100 (MQ=255)
     gatgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCgg                                                                                                 >  1:1891232/1‑99 (MQ=255)
      atgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGCGGCGGGAAAATAATTTATGTCAGGTTGCCGGAt                                                                                               >  1:3092261/1‑100 (MQ=255)
      atgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGAt                                                                                               >  1:2117786/1‑100 (MQ=255)
      atgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGAt                                                                                               <  1:418046/100‑1 (MQ=255)
      atgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGAt                                                                                               >  1:1035709/1‑100 (MQ=255)
       tgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATg                                                                                              <  1:1268194/100‑1 (MQ=255)
       tgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATg                                                                                              >  1:1019662/1‑100 (MQ=255)
       tgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATg                                                                                              >  2:2218965/1‑100 (MQ=255)
       tgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATg                                                                                              >  2:1785157/1‑100 (MQ=255)
       tgCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATg                                                                                              >  2:390075/1‑100 (MQ=255)
        gCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACGCGGAGGGGGGAAAATAATTTATGTCAGGTTGCCGGATgc                                                                                             >  1:2383136/1‑100 (MQ=255)
        gCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCAGGAAAATAATTTATGTCAGGTTGCCGGATgc                                                                                             >  2:139276/1‑100 (MQ=255)
         cGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcg                                                                                            >  2:743973/1‑100 (MQ=255)
         cGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcg                                                                                            >  2:212369/1‑100 (MQ=255)
          gAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcgg                                                                                           >  1:1388694/1‑100 (MQ=255)
           aaaCATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcggc                                                                                          <  1:525795/100‑1 (MQ=255)
           aaaCATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcggc                                                                                          <  1:884816/100‑1 (MQ=255)
            ttttgtttcatgccgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATgcggcg                                                                                         <  1:1219127‑M1/13‑1 (MQ=255)
            aaCATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATgcggcg                                                                                         <  2:1942514/100‑1 (MQ=255)
             aCATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGt                                                                                        <  2:2830600/100‑1 (MQ=255)
              cATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTa                                                                                       <  1:3030181/100‑1 (MQ=255)
                  gCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACg                                                                                   >  1:2390699/1‑100 (MQ=255)
                  gCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACg                                                                                   >  2:1619601/1‑100 (MQ=255)
                  gCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACg                                                                                   <  1:1389054/100‑1 (MQ=255)
                   cTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGCAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGc                                                                                  >  2:2468180/1‑100 (MQ=255)
                    tttACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGcc                                                                                 <  2:3106892/100‑1 (MQ=255)
                         cgaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATc                                                                            >  2:101549‑M1/75‑100 (MQ=255)
                          gagtgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATcc                                                                           >  1:2000529‑M1/74‑100 (MQ=255)
                          gaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATcc                                                                           >  2:1613636‑M1/74‑100 (MQ=255)
                          gaatgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATcc                                                                           >  2:730706‑M1/74‑100 (MQ=255)
                          gTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATcc                                                                           <  1:1960341/100‑1 (MQ=255)
                           tGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                                          <  2:1728831/100‑1 (MQ=255)
                            atgggcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCgg                                                                         >  1:2752017‑M1/72‑100 (MQ=255)
                             gATGAGTTAGCGCTGGTGATGGCGGCGTTTGTTACGCACCCGGAGGCGGGAAGATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                         <  2:1363393/99‑1 (MQ=25)
                             gATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                        >  2:1113607/1‑100 (MQ=255)
                              aTGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCa                                                                       <  2:2639904/100‑1 (MQ=255)
                              aTGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                        <  2:942674/99‑1 (MQ=37)
                              aTGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                       <  2:1134147/100‑1 (MQ=25)
                               tGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCAt                                                                      <  2:2334466/100‑1 (MQ=255)
                               tGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCAt                                                                      <  2:3268758/100‑1 (MQ=255)
                               tGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                      <  1:2730702/100‑2 (MQ=25)
                               tGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                      <  2:34152/100‑2 (MQ=25)
                                gcaattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCGGCATa                                                                     >  1:3061035‑M1/68‑100 (MQ=255)
                                gAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGCaac                                                                     <  1:1528032/100‑3 (MQ=25)
                                 caattgaactctgaaaccgttgtctgatgcgcttcgcctgtcaggtctacaaccgggctaatgtatGCCGGATGCGGCGTAAACGCCTTATCCGGCATAc                                                                    >  1:3124775‑M1/67‑100 (MQ=255)
                                    tAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACAtt                                                                 >  1:2279982/1‑100 (MQ=255)
                                    tAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACAtt                                                                 >  1:3015723/1‑100 (MQ=255)
                                       cgcTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGc                                                              >  2:3150202/1‑100 (MQ=255)
                                        gcTGGTGATGGCGGCGTTTGATTCGGACCCTGAGGCGGGAAAATAATGTATGGCAGGTTGCCGGATAAGGCGTTTACGCCGCATCCGGcgtcctg                                                                  <  1:1871675/95‑7 (MQ=16)
                                         cTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGccc                                                            >  2:306247/1‑100 (MQ=255)
                                           ggTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCgg                                                          <  2:1790623/100‑1 (MQ=255)
                                            gTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGt                                                         <  2:2296204/100‑1 (MQ=255)
                                             tGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGtt                                                        >  1:2704730/1‑100 (MQ=255)
                                             tGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGtt                                                        <  2:2870561/100‑1 (MQ=255)
                                              gATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAGACGCCTTATCCGGCATACATTAGCCCGGTTg                                                       >  1:1364205/1‑100 (MQ=255)
                                              gATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTg                                                       <  2:1477686/100‑1 (MQ=255)
                                              gATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTg                                                       <  1:3077546/100‑1 (MQ=255)
                                              gATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTg                                                       >  1:2634853/1‑100 (MQ=255)
                                                tGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTa                                                     <  2:501709/100‑1 (MQ=255)
                                                tGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTa                                                     >  2:2744561/1‑100 (MQ=255)
                                                  gcggcgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGa                                                   >  2:1190325/1‑100 (MQ=255)
                                                    ggcgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGAcc                                                 <  1:2538026/100‑1 (MQ=255)
                                                    ggcgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGAcc                                                 <  1:191628/100‑1 (MQ=255)
                                                      cgTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTg                                               <  2:2608254/100‑1 (MQ=255)
                                                           gATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTTTCCGGCATACATTAGCCCGGTTGTAGACCTGACAgg                                          <  2:2383153/100‑1 (MQ=255)
                                                            aTACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGc                                         <  2:509272/100‑1 (MQ=255)
                                                             tACGCACCCGGGGGCGGGAAAATAATTTATGTCAGGTTGGCGGATTCGGTGTAAACGCCGTATCCGGCATACATTATCCCGGTTGTAGACCTGACAGGCg                                        <  1:3375065/100‑1 (MQ=255)
                                                             tACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCg                                        >  1:3227630/1‑100 (MQ=255)
                                                              aCGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGa                                       <  2:1037393/100‑1 (MQ=255)
                                                               cGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGaa                                      >  1:1652869/1‑100 (MQ=255)
                                                                   cccGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATTCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAgcg                                   <  1:3235398/99‑1 (MQ=255)
                                                                   cccGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAgcgc                                  >  2:761280/1‑100 (MQ=255)
                                                                    ccGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCa                                 <  2:2634873/100‑1 (MQ=255)
                                                                       gAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCa                              <  1:2091905/100‑1 (MQ=255)
                                                                         ggCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAg                             <  1:3230942/99‑1 (MQ=255)
                                                                         ggCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGa                            <  2:58535/100‑1 (MQ=255)
                                                                           cGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACa                          >  2:2187154/1‑100 (MQ=255)
                                                                           cGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACa                          >  1:2560249/1‑100 (MQ=255)
                                                                            gggAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACaa                         >  2:2140868/1‑100 (MQ=255)
                                                                              gAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACg                       >  1:885422/1‑100 (MQ=255)
                                                                                   taatTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTc                  <  1:2835183/100‑1 (MQ=255)
                                                                                   taatTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTc                  <  1:1958696/100‑1 (MQ=255)
                                                                                     atTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCag                <  2:1968276/100‑1 (MQ=255)
                                                                                      tttATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCag                <  2:2041449/99‑1 (MQ=255)
                                                                                       ttATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCagag              >  2:2998310/1‑100 (MQ=255)
                                                                                         aTGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGtt            <  2:3082307/100‑1 (MQ=255)
                                                                                           gTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCa          >  1:171956/1‑100 (MQ=255)
                                                                                             cAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAAt        <  2:3282633/100‑1 (MQ=255)
                                                                                              aGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAAtt       >  1:550816/1‑100 (MQ=255)
                                                                                                gTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTGGACCTGACAGGCGAGACGCATCAGTCAACGGTTTCAGAGTCCAATTGc     >  1:1294584/1‑100 (MQ=37)
                                                                                                  tGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGccc   >  1:607797‑M1/2‑100 (MQ=255)
                                                                                                  tGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGccc   >  1:3382050‑M1/2‑100 (MQ=255)
                                                                                                  tGCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGccc   <  2:3343249‑M1/99‑1 (MQ=255)
                                                                                                   GCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCa  <  2:2949482‑M1/100‑1 (MQ=255)
                                                                                                   GCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCa  <  2:635209‑M1/100‑1 (MQ=255)
                                                                                                   GCCGGATAAGGCGTTTACGCCGCATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCa  <  2:1221926‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGGATGATGCGAAACATGGCTTTACCGTGGATGAGTTAGCGCTGGTGATGGCGGCGTTTGATACGCACCCGGAGGCGGGAAAATAATTTATGTCAGGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACATTAGCCCGGTTGTAGACCTGACAGGCGAAGCGCATCAGACAACGGTTTCAGAGTTCAATTGCCCA  >  NC_000913/1534784‑1534982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.