New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2393130	NA (NA)	6 (0.050)	6/164	NT	NA	intergenic (‑89/+75)	nuoM/nuoL	NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L
	?	NC_000913	= 2393162	NA (NA)					noncoding (32/36 nt)	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences

TAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2393033‑2393130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTACAA  <  NC_000913/2393162‑2393057                                                                                                                                                                                                              TAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGT                                                                                                          <  1:1527227/100‑1  AGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTC                                                                                                         >  1:1822160/1‑100   GTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCG                                                                                                        <  1:2304318/100‑1    TAACATGGCGATCTTTTTTCCTTGTACAAGTCCCGTCAGGTCCGGATTGTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGG                                                                                                       <  1:3237813/100‑1    TAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAACTTCTCTTCGGACTGGGGGTAGTGTC                                                                                                         >  1:1576319/1‑98     AACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTacga                                                                                                      >  1:867076/1‑96     AACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGA                                                                                                      <  1:1533874/100‑1     AACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGA                                                                                                      >  1:114242/1‑100     AACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGA                                                                                                      <  2:1065772/100‑1     AACATGGCGATCTTTATTCCTTGTAAAAGTACCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGG                                                                                                       >  2:2004/1‑99     AACATGGCGATCTTTATTCCTTGTAAAAGGCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGA                                                                                                      <  2:2430584/100‑1      ACATGGTGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGAT                                                                                                     <  2:925675/100‑1                               AAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC                                                                            <  1:302370/100‑1                                AGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACA                                                                           <  2:1377585/100‑1                                 GTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAGTTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACAC                                                                          <  1:2175192/100‑1                                  TCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACT                                                                         <  1:3320374/100‑1                                      GTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCC                                                                     <  2:2656670/100‑1                                      GTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACC                                                                      <  1:2004829/99‑1                                                                                                   GTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTT        >  1:2094828/1‑100                                                                                                     CGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTT      <  2:2094423/100‑1                                                                                                     CGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTT      >  2:1883102/1‑100                                                                                                      GGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTA     >  2:2001577/1‑100                                                                                                       GATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTAC    <  2:2370915/100‑1                                                                                                       GATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTAC    >  2:2790825/1‑100                                                                                                         TAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTACAA  >  2:226123/1‑100                                                                                                         TAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTACAA  >  1:1789438/1‑100                                                                                                                                                                                                              TAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2393033‑2393130 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCGTTGAAAATCCGGTCCTGACGGGACTTTTACAA  <  NC_000913/2393162‑2393057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.