BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3962704 =	NA (NA)	6 (0.050)	6/166	NT	NA	noncoding (5/36 nt)	REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	3962736 =	NA (NA)	6 (0.050)	6/166	NT	NA	intergenic (+38/+9)	rep/gpp	DNA helicase and single‑stranded DNA‑dependent ATPase/guanosine pentaphosphatase/exopolyphosphatase

Only 100 of 200 total aligned reads displayed.

AGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCCAA  >  NC_000913/3962637‑3962835

 gAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCAc                                                                                                     <  2:43502/100‑1 (MQ=255)

   tgctcagggaaggcagtggcagagctatgtccactggccgctggaagtgcattaatgagtacgtGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACtt                                                                                                   >  1:2160212‑M1/65‑100 (MQ=255)

     gggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTAc                                                                                                 <  2:2636332/100‑1 (MQ=255)

     cgcaggaaagtcagtggcagagctatgtccactggccgctggaagtgcattaatgagtaagtGCCGGAACAGATGCGTCAGCATCGCATCCGGCACTTAc                                                                                                 >  1:2227787‑M1/63‑100 (MQ=255)

      tcaggaaagccagtggcagagctatgtccactggccgctggaagtgcattaatgagtaagtGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACt                                                                                                >  2:285704‑M1/62‑100 (MQ=255)

      ggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACt                                                                                                >  2:1896751/1‑100 (MQ=255)

      ggCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACt                                                                                                >  1:975354/1‑100 (MQ=255)

          aaGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCa                                                                                              <  1:2082906/98‑1 (MQ=255)

          aaGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt                                                                                            <  2:630001/100‑1 (MQ=255)

          aaGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCAtt                                                                                            <  2:2800584/100‑1 (MQ=255)

            gCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTaa                                                                                          <  2:695445/100‑1 (MQ=255)

              cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAAt                                                                                         <  1:1608794/99‑1 (MQ=255)

              cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATg                                                                                        <  2:1319795/100‑1 (MQ=255)

              cATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATg                                                                                        <  1:2453910/100‑1 (MQ=255)

               aTCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGc                                                                                       >  2:1804333/1‑100 (MQ=255)

               aTCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGc                                                                                       <  1:576630/100‑1 (MQ=255)

                 cTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGc                                                                                       <  2:1381108/98‑1 (MQ=255)

                  tGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAGTAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACt                                                                                    <  1:2994019/100‑1 (MQ=255)

                  tGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCaga                                                                                    >  2:2369733/1‑98 (MQ=255)

                   ggCGAACCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATACTCAACGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAGTGCACtt                                                                                   >  1:356654/1‑100 (MQ=38)

                     cGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTcc                                                                                 >  2:1632491/1‑100 (MQ=255)

                      gAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCa                                                                                <  1:2750373/100‑1 (MQ=255)

                       aaTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAg                                                                               <  2:546845/100‑1 (MQ=255)

                        aTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGc                                                                              <  1:2191457/100‑1 (MQ=255)

                        aTCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGc                                                                              <  2:2315490/100‑1 (MQ=255)

                         tCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCACCGCATCCGGCACTTACTCATTAATGCACTTCCAGCg                                                                             <  2:2386002/100‑1 (MQ=255)

                          cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCgg                                                                            >  2:1859582/1‑100 (MQ=255)

                          cTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCg                                                                             >  1:2783742/1‑99 (MQ=255)

                           tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGc                                                                           >  1:2370847/1‑100 (MQ=255)

                           tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGc                                                                           >  1:1785980/1‑100 (MQ=255)

                           tGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGc                                                                           >  2:2190709/1‑100 (MQ=255)

                            gAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc                                                                          <  2:1346094/100‑1 (MQ=255)

                            gAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc                                                                          >  2:2892111/1‑100 (MQ=255)

                            gAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGcc                                                                          <  2:317751/100‑1 (MQ=255)

                              aaGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAg                                                                        <  1:149523/100‑1 (MQ=255)

                                 cGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCAGTTCCAGCGGCCAGTgg                                                                     <  1:442462/100‑1 (MQ=255)

                                 cGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg                                                                     >  2:3117128/1‑100 (MQ=255)

                                   atgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTgg                                                                     <  1:2814165/98‑1 (MQ=255)

                                   atgatgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGAc                                                                   <  2:1105439/100‑1 (MQ=255)

                                      atgGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATa                                                                <  2:1959585/100‑1 (MQ=255)

                                        ggcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGc                                                              <  1:2693805/100‑1 (MQ=255)

                                         gcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGct                                                             >  2:2721121/1‑100 (MQ=255)

                                         gcggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGct                                                             >  2:3186298/1‑100 (MQ=255)

                                          cggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGctc                                                            <  2:893993/100‑1 (MQ=255)

                                          cggcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGctc                                                            <  1:2423839/100‑1 (MQ=255)

                                            gcAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTg                                                          <  2:2253598/100‑1 (MQ=255)

                                              aaaaCGAGGGAAATCCTCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGCACATAGCTCTG‑cc                                                       >  1:1106190/1‑100 (MQ=255)

                                                 gtgcattaatgagtaagtgccggatgcgatgctgacgcatcttttccggcACTTACTCATTAATGCACTTCCATCGGCCAGTGGACATAGCTCTG‑CCAc                                                     >  1:504737‑M2/51‑99 (MQ=255)

                                                 aCGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACt                                                    >  1:943348/1‑100 (MQ=255)

                                                  cGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTg                                                   >  1:402323/1‑100 (MQ=255)

                                                  cGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTg                                                   <  2:1436041/100‑1 (MQ=255)

                                                   gAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTgg                                                  <  1:1332387/100‑1 (MQ=255)

                                                   gAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTgg                                                  >  2:2096794/1‑100 (MQ=255)

                                                    aGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGc                                                 <  2:1013217/100‑1 (MQ=255)

                                                     gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCt                                                >  2:160021/1‑100 (MQ=255)

                                                     gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCt                                                <  2:2221200/100‑1 (MQ=255)

                                                     gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCt                                                >  1:2577924/1‑100 (MQ=255)

                                                     gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGG‑CAGAGCTATGTCCACTGGcc                                                <  1:228849/100‑2 (MQ=37)

                                                     gggAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGG‑CAGAGCTATGTCCACTGGcc                                                <  2:1268441/100‑2 (MQ=37)

                                                      tgAAATAATCAGGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTGACTCATTAATGCACTTCCAGCGGCCAGTGG‑CAGAGCTATGTCCACTGGc                                                 <  1:143445/97‑1 (MQ=25)

                                                       gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCttt                                              >  1:811407/1‑100 (MQ=255)

                                                       gAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCttt                                              >  2:2007838/1‑100 (MQ=255)

                                                        aaaTAATCAAGGTCGGAAAAGATGCGTCAGCATCGCATCCGGCACTGACTCATTAATGCACTTCCAGCGGCCAGTGG‑CAGAGCTATGTCCACTGGccg                                               <  2:2997312/98‑3 (MQ=25)

                                                          ataatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCt                                           <  1:139959/100‑1 (MQ=255)

                                                           taatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTg                                          <  2:1230469/100‑1 (MQ=255)

                                                           taatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTg                                          >  1:2364351/1‑100 (MQ=255)

                                                           taatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTg                                          <  1:3117101/100‑1 (MQ=255)

                                                            aatCAAGGCCGGAAAAGATGCGTTAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGa                                         <  1:490595/100‑1 (MQ=255)

                                                            aatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGa                                         <  1:1678418/100‑1 (MQ=255)

                                                            aatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGa                                         >  2:3063995/1‑100 (MQ=255)

                                                            aatCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGa                                         >  2:401916/1‑100 (MQ=255)

                                                              tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGc                                       <  2:1785991/100‑1 (MQ=255)

                                                              tCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCAGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGc                                       <  2:154125/100‑1 (MQ=255)

                                                                agtgccggatgcgatgctgacgcatcttttccggcACTTACTTATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCaa                                     >  1:2658382‑M2/36‑100 (MQ=255)

                                                                 aGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCaat                                    >  2:1153269/1‑100 (MQ=255)

                                                                  ggCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGG‑CAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCaataa                                  >  2:1486421/1‑100 (MQ=255)

                                                                  ggCCAGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCGAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAg                                        <  1:2582422/95‑1 (MQ=255)

                                                                   gccggatgcgatgctgacgcatcttttccggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCaataa                                  >  2:1929280‑M2/33‑100 (MQ=255)

                                                                         aaaGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCtt                            <  1:3310109/100‑1 (MQ=255)

                                                                         aaaGATGCCTCAGCATCGCATCCGGCACTTACTCCTTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATctct                             <  1:1189409/99‑1 (MQ=255)

                                                                           aGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTa                          <  2:485139/100‑1 (MQ=255)

                                                                           aGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTa                          >  1:164459/1‑100 (MQ=255)

                                                                            gATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTAc                         >  2:3364701/1‑100 (MQ=255)

                                                                              tGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTAccc                       >  2:2600496/1‑100 (MQ=255)

                                                                                cGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAg                     >  2:2690469/1‑100 (MQ=255)

                                                                                 gtaaGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATCGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGc                    >  2:140133/4‑100 (MQ=255)

                                                                                   cAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCgg                  >  2:2668133/1‑100 (MQ=255)

                                                                                     gcatcgcatcCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGAt                >  1:1372025/1‑100 (MQ=255)

                                                                                     gcatcgcatcCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGAt                >  2:2344557/1‑100 (MQ=255)

                                                                                     gcatcgcatcCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGAt                <  1:1804322/100‑1 (MQ=255)

                                                                                       atcgcatcCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGt              >  2:1044079/1‑100 (MQ=255)

                                                                                        tcgcatcCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGtt             <  1:2694425/100‑1 (MQ=255)

                                                                                        tcgcatcCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGtt             >  2:183945/1‑100 (MQ=255)

                                                                                          gcatcCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTgg           <  1:2654552/100‑1 (MQ=255)

                                                                                             tccggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGtt        <  2:81987‑M2/94‑1 (MQ=255)

                                                                                              ccggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGt         <  1:1012405‑M2/93‑1 (MQ=255)

                                                                                               cggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTa       <  1:706283‑M2/95‑1 (MQ=255)

                                                                                                ggcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGc     <  1:1049482‑M2/97‑1 (MQ=255)

                                                                                                 gcACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGcc    <  2:2912514‑M2/98‑1 (MQ=255)

                                                                                                   aCTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCGCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCCaa  <  1:1445843/100‑1 (MQ=255)

AGAAAGGGCAAAGCCATCTGGCGAATCTGAAAGCGATGATGGCGGCAAAACGAGGGAAATAATCAAGGCCGGAAAAGATGCGTCAGCATCGCATCCGGCACTTACTCATTAATGCACTTCCAGCGGCCAGTGGACATAGCTCTG‑CCACTGGCTTTCCTGAGCAATAATCTCTTTACCCAGCGGATGTTGGGTTAGCCAA  >  NC_000913/3962637‑3962835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.