New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4541922 =136 (1.100)8 (0.070) 8/170 NT 5.9% intergenic (+363/‑115) fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
?NC_000913 4541952 = 126 (1.070)intergenic (+393/‑85) fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA
Rejected: Frequency below cutoff threshold.

Only 100 of 170 total aligned reads displayed.

ATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGT  >  NC_000913/4541854‑4542051
                                                                                                  |                                                                                                   
atcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCtt                                                                                                    >  1:640117/1‑100 (MQ=255)
atcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCtt                                                                                                    >  2:2567708/1‑100 (MQ=255)
  caaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCtttt                                                                                                  >  1:1022743/1‑100 (MQ=255)
  caaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCtttt                                                                                                  >  1:2998794/1‑100 (MQ=255)
  caaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCtttt                                                                                                  >  1:1674381/1‑100 (MQ=255)
  caaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCtttt                                                                                                  <  1:1708065/100‑1 (MQ=255)
   tattttcattgATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCttttt                                                                                                 >  2:3353800/11‑100 (MQ=255)
   aaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCttttt                                                                                                 >  1:587532/1‑100 (MQ=255)
     tGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTAt                                                                                               >  2:829565/1‑100 (MQ=255)
      gAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATc                                                                                              <  1:451234/100‑1 (MQ=255)
          aTAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTAtt                                                                                          <  2:14460/100‑1 (MQ=255)
          aTAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTAtt                                                                                          <  2:2324793/100‑1 (MQ=255)
           tAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTg                                                                                         <  2:318225/100‑1 (MQ=255)
            aGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTg                                                                                         >  1:679840/1‑99 (MQ=255)
                gttgtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTgtgata                                                                                    >  1:3244306/1‑95 (MQ=255)
                  tgtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAt                                                                                  >  1:2636014/1‑100 (MQ=255)
                  tgtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAt                                                                                  >  1:3113220/1‑100 (MQ=255)
                   gtCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAtt                                                                                 <  1:2459965/100‑1 (MQ=255)
                    tCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAttt                                                                                <  1:1981724/100‑1 (MQ=255)
                      acaTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTg                                                                              <  2:264016/100‑1 (MQ=255)
                      acaTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTg                                                                              <  2:2738331/100‑1 (MQ=255)
                      acaTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTg                                                                              <  2:3000473/100‑1 (MQ=255)
                       caTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGa                                                                             <  2:69291/100‑1 (MQ=255)
                        aTCAGTTTTATTTTATTTTTATATGATATTTAGTGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTGAACTATTGGGCTAAGTCTGAc                                                                            <  1:561928/100‑1 (MQ=255)
                        aTCAGTTATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAc                                                                            <  1:379656/100‑1 (MQ=255)
                        aTCAGTGATATTTTATTTTTGTATGATATTTACTGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAc                                                                            <  1:1258316/100‑1 (MQ=255)
                         tCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAcc                                                                           <  1:3258095/100‑1 (MQ=255)
                           aGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGa                                                                         >  1:2452103/1‑100 (MQ=255)
                            gTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCAGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGAt                                                                        >  2:1655416/1‑100 (MQ=255)
                              gATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTg                                                                      <  2:232297/100‑1 (MQ=255)
                              gATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTg                                                                      <  2:979676/100‑1 (MQ=255)
                               atatTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGa                                                                     <  2:2575943/100‑1 (MQ=255)
                                 attttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAgg                                                                   >  2:20962/1‑100 (MQ=255)
                                 attttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAgg                                                                   <  1:2747239/100‑1 (MQ=255)
                                 attttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAgg                                                                   <  2:550695/100‑1 (MQ=255)
                                 attttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAgg                                                                   <  2:1037145/100‑1 (MQ=255)
                                  ttttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGTTTATCTTTTTATCTATTGGGCTAATTTTGACAGATTGAGGt                                                                  >  1:802959/1‑100 (MQ=255)
                                    ttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGttt                                                                <  2:2209099/100‑1 (MQ=255)
                                    ttattttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGttt                                                                <  2:382002/100‑1 (MQ=255)
                                      attttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTcc                                                              <  2:1639906/100‑1 (MQ=255)
                                      attttTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTcc                                                              <  2:825066/100‑1 (MQ=255)
                                       tttttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCt                                                             >  2:585808/1‑100 (MQ=255)
                                        ttttGTATGATATTTAATGTAATTGACTGATAGCCTCATTACTGCGTGTGTGGTTATCTTTTTATCTTTTGGTCTAATTTTGACCGATTGAGGTTTCCt                                                             <  1:311525/99‑1 (MQ=255)
                                        ttttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCta                                                            <  1:90589/100‑1 (MQ=255)
                                         tttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCtat                                                           >  1:1882595/1‑100 (MQ=255)
                                         tttGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCtat                                                           >  1:436615/1‑100 (MQ=255)
                                           tGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAg                                                         <  2:2356811/100‑1 (MQ=255)
                                           tGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAg                                                         <  2:1473646/100‑1 (MQ=255)
                                            gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTTGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGACGTTTCCTATAgg                                                        <  1:509882/100‑1 (MQ=255)
                                            gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                        <  1:1330275/100‑1 (MQ=255)
                                            gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                        <  1:173412/100‑1 (MQ=255)
                                            gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                        <  2:2452122/100‑1 (MQ=255)
                                                gATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTatt                                                    <  2:52144/100‑1 (MQ=255)
                                                    tttAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattcatt                                                <  2:2998820/100‑1 (MQ=255)
                                                      tAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTAttcattca                                              <  2:101754/100‑1 (MQ=255)
                                                      ccaatagataaaaagataaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTAttcattca                                              >  1:916155‑M2/45‑100 (MQ=255)
                                                           tAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatat                                         >  1:727762/1‑100 (MQ=255)
                                                           agataaaaagataaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatat                                         >  1:1856531‑M2/40‑100 (MQ=255)
                                                            gataaaaagataaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatata                                        >  1:351467‑M2/39‑100 (MQ=255)
                                                              ttGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtc                                      <  1:806746/100‑1 (MQ=255)
                                                                gACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtctc                                    >  1:2365244/1‑100 (MQ=255)
                                                                aaaagataaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATAtctc                                    >  1:2511920‑M2/35‑100 (MQ=255)
                                                                  cTGATAGCCACATCACTCCGTGTGTGGTTATGTTTTTATCTACTGGGCTAATTTTGACCGATTGAGGTTACCCATAGGGATTAATTCACATATATATCAg                                  >  1:2167826/1‑100 (MQ=255)
                                                                  cTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAg                                  >  1:1909993/1‑100 (MQ=255)
                                                                  cTGATAGCCACATCACTCCGTGTGTGGTTAACTATTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAg                                  >  1:2222097/1‑100 (MQ=255)
                                                                      taaccacacacggagtgatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAg                              >  2:1835977‑M2/29‑100 (MQ=255)
                                                                      TAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAg                              >  1:2337616‑M1/1‑100 (MQ=255)
                                                                       AGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                             >  1:2682847‑M1/1‑100 (MQ=255)
                                                                       AGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                             >  1:3302219‑M1/1‑100 (MQ=255)
                                                                        gCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGa                            <  1:340829/100‑1 (MQ=255)
                                                                        gCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGa                            >  2:1914952/1‑100 (MQ=255)
                                                                        accacacacggagtgatgtggttatcTTTTTCTCTATTGGGCTAATGTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGa                            >  1:1015823‑M2/27‑100 (MQ=255)
                                                                              tCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtacta                      >  1:1304309/1‑100 (MQ=255)
                                                                              tCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtacta                      <  1:1091022/100‑1 (MQ=255)
                                                                               cACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTGTAGGTAGTCATTCAAATATATCTCAGTTAGGAGtactac                     >  1:2381289/1‑100 (MQ=255)
                                                                               cACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtactac                     <  1:264618/100‑1 (MQ=255)
                                                                                aCTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTactact                    >  1:1854636/1‑100 (MQ=255)
                                                                                 cTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                   <  2:869066/100‑1 (MQ=255)
                                                                                  tCCGTGTGAGGTTATCTTTTTATCTATTGGGCTAATTTTAACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTTAGTTAGGAGTACTACTAt                  <  1:624035/100‑1 (MQ=255)
                                                                                   ccGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTAtt                 >  2:1813555/1‑100 (MQ=255)
                                                                                   ccGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTAtt                 >  2:1595819/1‑100 (MQ=255)
                                                                                   ccGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTAtt                 >  2:3346601/1‑100 (MQ=255)
                                                                                    cGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGCGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                >  2:2951563/1‑100 (MQ=255)
                                                                                      tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              <  1:3039455/100‑1 (MQ=255)
                                                                                      tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              >  2:3369611/1‑100 (MQ=255)
                                                                                      tgtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              <  2:2736886/100‑1 (MQ=255)
                                                                                      gatgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtgtg              <  2:1856543‑M2/88‑1 (MQ=255)
                                                                                       gtgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGa             <  1:318538/100‑1 (MQ=255)
                                                                                       atgtggctatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGa             >  1:2740026‑M2/12‑100 (MQ=255)
                                                                                        tgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAg            <  2:1914018/100‑1 (MQ=255)
                                                                                        tgtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAg            <  2:1675805/100‑1 (MQ=255)
                                                                                         gtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGTAGTACTACTATTGTGAg            >  1:907591/1‑99 (MQ=255)
                                                                                         gtgGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGt           >  2:126317/1‑100 (MQ=255)
                                                                                              tatcTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcg      >  2:1426357‑M2/5‑100 (MQ=255)
                                                                                                 cTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcg   <  2:667422‑M2/99‑1 (MQ=255)
                                                                                                 cTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcg   >  2:902252‑M2/2‑100 (MQ=255)
                                                                                                 cTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcg   >  1:3232776‑M2/2‑100 (MQ=255)
                                                                                                 cTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtc    >  1:1948726‑M2/2‑99 (MQ=255)
                                                                                                  tttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcgt  <  1:3369583/100‑1 (MQ=255)
                                                                                                  tttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcg   >  1:849225/1‑99 (MQ=255)
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ATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGT  >  NC_000913/4541854‑4542051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.