New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3811200 =	75 (1.160)	9 (0.160)	9/174	5.6	12.1%	intergenic (‑48/+50)	mutM/rpmG	formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33
	?	NC_000913	3811236 =	65 (1.150)					intergenic (‑84/+14)	mutM/rpmG	formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GAAAAAATTCGATCCAGTTGTTCGCCAGCACGTGATCTACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3811310‑3811200 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTA  >  NC_000913/3811236‑3811334                                                                                                                                                                                                                    GAAAAAATTCGATCCAGTTGTTCGCCAGCACGTGATCTACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGG                                                                                                                <  2:220981/100‑1          CGATCCAGTTGTTCGCCAGCACGTGATCTACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGT                                                                                                       >  2:353552/1‑100          CGATCCAGTTGTTCGCCAGCACGTGATCTACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGT                                                                                                       >  2:1293058/1‑100           GATCCAGTTGTTCGCCAGCACGTGATCTACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTT                                                                                                      >  1:1362864/1‑100            ATCCAGTTGTTCGCCAGCACGTGATCTACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTA                                                                                                     >  2:1359019/1‑100             taCAGTTGTGCGCCAGCACGTGATCTACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTA                                                                                                     <  2:490916/97‑1             TCCAGTTGTTCGCCAGCACGTGATATACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTG                                                                                                        <  2:1500643/96‑1                                          AAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCT                                                                       <  1:437949/100‑1                                          AAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCT                                                                       >  1:508099/1‑100                                                CGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTT                                                                  >  2:232749/1‑99                                                                    CTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAAC                                             <  2:508098/100‑1                                                                          TGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGG                                       >  1:332047/1‑100                                                                           GTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGA                                      >  2:1025265/1‑100                                                                             AACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATC                                    >  2:1295874/1‑100                                                                               CAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGA                                  >  1:1476385/1‑100                                                                                                   GGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTT              <  2:332047/100‑1                                                                                                       TTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCG          <  1:154751/100‑1                                                                                                       TTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCG          <  1:1129998/100‑1                                                                                                       TTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCG          <  2:542709/100‑1                                                                                                         TTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGC        >  2:1173863/1‑100                                                                                                         TTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGC        <  1:232749/100‑1                                                                                                          TTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCT       >  1:337658/1‑100                                                                                                           TGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTT      >  1:967362/1‑100                                                                                                               ACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTA  >  2:763291/1‑100                                                                                                                                                                                                                    GAAAAAATTCGATCCAGTTGTTCGCCAGCACGTGATCTACAAAGAAGCGAAAATCAAATAATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGTTTTTTGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3811310‑3811200 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTA  >  NC_000913/3811236‑3811334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.