| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3811200 = | 75 (1.160) | 9 (0.160) | 9/174 | 5.6 | 12.1% | intergenic (‑48/+50) | mutM/rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| ? | NC_000913 | 3811236 = | 65 (1.150) | intergenic (‑84/+14) | mutM/rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
ATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGAT > NC_000913/3811102‑3811299 | aTGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATa < 1:708791/100‑1 (MQ=255) gCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAAc > 2:1484220/1‑100 (MQ=255) ggTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACaa > 1:1310351/1‑100 (MQ=255) tCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACaaaaa > 2:1129993/1‑100 (MQ=255) tATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAAc > 1:1236712/1‑100 (MQ=255) tATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAAc < 2:1553552/100‑1 (MQ=255) tGCCGCGGCGGCTGGTCTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAAccc < 2:924973/100‑1 (MQ=255) gCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAAcccc > 2:1362857/1‑100 (MQ=255) gCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAAcccc > 1:970046/1‑100 (MQ=255) ccGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCccg > 1:884627/1‑100 (MQ=255) cgcgGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCccgc > 1:770519/1‑100 (MQ=255) ggcggcTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑Cgg < 1:1095805/100‑1 (MQ=255) cggcTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAg < 1:882771/100‑1 (MQ=255) cTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGa > 2:658961/1‑100 (MQ=255) ggTTTCAACTTCGGGTAATTCAGGCATATTTTTTCTATTTATGTACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAgg > 2:99182/1‑100 (MQ=25) ggTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAgg > 2:872566/1‑100 (MQ=255) ggTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAgg > 2:894844/1‑100 (MQ=255) ttCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGttt < 1:844657/100‑1 (MQ=255) cAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGttttt > 2:1205011/1‑100 (MQ=255) aaCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGtttttt < 2:1531165/100‑1 (MQ=255) aaCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGttttt < 2:693447/99‑1 (MQ=255) aCTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTg > 1:719171/1‑100 (MQ=255) ttCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGtt < 2:339163/100‑1 (MQ=255) ttCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGtt < 1:1195027/100‑1 (MQ=255) tCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTa > 1:1293064/1‑100 (MQ=255) tCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTa < 1:1018892/100‑1 (MQ=255) cGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTAc > 1:292820/1‑100 (MQ=255) gggTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACa < 1:619980/100‑1 (MQ=255) gggTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACa > 1:552523/1‑100 (MQ=255) ggTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACAt > 1:110001/1‑100 (MQ=255) gTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATc < 2:693389/100‑1 (MQ=255) aTTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCaaa < 1:1359230/100‑1 (MQ=255) aTTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCaaa < 2:970041/100‑1 (MQ=255) ttCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAg < 2:1245808/100‑1 (MQ=255) aGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCga > 1:1246067/1‑100 (MQ=255) aGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCga > 1:1025093/1‑100 (MQ=255) aGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGACAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCga > 1:1500628/1‑100 (MQ=255) cATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGaa > 1:286752/1‑100 (MQ=255) cATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGaa > 1:402028/1‑100 (MQ=255) tAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAatt > 2:271906/1‑100 (MQ=255) aGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAatta < 2:282164/100‑1 (MQ=255) gCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAattat > 1:1359026/1‑100 (MQ=255) gCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAattat > 1:825480/1‑100 (MQ=255) gCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAattat > 2:1372763/1‑100 (MQ=255) cATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAattatt < 2:550241/100‑1 (MQ=255) aTCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTAttt < 2:832394/100‑1 (MQ=255) aTCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTAttt < 1:1371962/100‑1 (MQ=255) tctcCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTg > 2:1208828/1‑100 (MQ=255) tcCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGAt > 1:683210/1‑100 (MQ=255) gAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGcttc > 2:717145/1‑100 (MQ=255) aaCAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGcttct > 2:309613/1‑100 (MQ=255) aCAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGcttctt < 2:450504/100‑1 (MQ=255) gATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGt > 2:589146/1‑100 (MQ=255) gATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGt < 2:1137755/100‑1 (MQ=255) aTGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTa < 1:575066/100‑1 (MQ=255) aTGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTa < 2:1310345/100‑1 (MQ=255) tGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAg < 2:884622/100‑1 (MQ=255) tGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAg < 2:81548/100‑1 (MQ=255) aGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATc < 2:928713/100‑1 (MQ=255) aGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATc > 1:542710/1‑100 (MQ=255) gTCAATATGGGGGCAAGGAGATAACAAAGAACCCCGC‑CGGAGCGAGGTTTTTTGTTACGTCAAAGCGCGAATTAATGGGTTTTCGCTTCTTTGTGGAt > 2:539323/1‑98 (MQ=37) gTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCa > 2:377316/1‑100 (MQ=255) cAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACg > 1:957267/1‑100 (MQ=255) tatGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGc > 1:1241156/1‑100 (MQ=255) tatGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGc < 2:218751/100‑1 (MQ=255) gggCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCg > 2:48940/1‑100 (MQ=255) gggCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCg < 2:589858/100‑1 (MQ=255) ggCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCg < 1:1236438/99‑1 (MQ=255) ggCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGa > 1:1257819/1‑100 (MQ=255) cAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaac < 1:1372770/100‑1 (MQ=255) cAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaac > 2:1331447/1‑100 (MQ=255) aaGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaaca > 2:731788/1‑100 (MQ=255) aGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaacaa > 1:1152026/1‑100 (MQ=255) gCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGaacaac > 2:1283775/1‑100 (MQ=255) aGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTg < 2:203519/100‑1 (MQ=255) tgtAACAAAAAACCTCGCTCCG‑GCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTgg > 1:332047/3‑100 (MQ=25) gtAACAAAAAACCTCGCTCCG‑GCGGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGa > 2:1025265/2‑100 (MQ=25) tAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGCACAACTgta > 2:490916/1‑97 (MQ=255) tAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGAt < 2:1359019/100‑1 (MQ=255) | ATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGC‑CGGAGCGAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTTCTTTGTAGATCACGTGCTGGCGAACAACTGGAT > NC_000913/3811102‑3811299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |