New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3220891NA (NA)11 (0.080) 8/154 NT NA noncoding (12/31 nt) REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3220898 NA (NA)noncoding (19/31 nt) REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences

CCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3220781‑3220891
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcg‑‑aCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTT  <  NC_000913/3220898‑3220800
                                                                                                                                                                                                                    
CCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAA                                                                                                                  >  2:308121/1‑100
 CACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAAT                                                                                                                 >  2:852100/1‑100
 CACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAAT                                                                                                                 <  1:1676177/100‑1
 CACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAAT                                                                                                                 <  1:3204730/100‑1
  ACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATC                                                                                                                <  1:1284698/100‑1
  ACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAAT                                                                                                                 <  2:390394/99‑1
  ACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAAT                                                                                                                 <  1:268785/99‑1
    TGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGG                                                                                                              <  2:2966489/100‑1
    TGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGG                                                                                                              <  1:1937919/100‑1
      ACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGAT                                                                                                            <  2:1240445/100‑1
       CACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATG                                                                                                           >  1:1337718/1‑100
       CACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATG                                                                                                           <  2:4145774/100‑1
       CACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATG                                                                                                           <  2:3060722/100‑1
       CACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATG                                                                                                           >  2:2950784/1‑100
        ACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGG                                                                                                          >  1:3085615/1‑100
         CTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGC                                                                                                         <  1:1698095/100‑1
         CTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGC                                                                                                         <  1:1974259/100‑1
          TGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG                                                                                                        >  2:4136343/1‑100
           GACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑A                                                                                                     <  1:335235/100‑1
             CCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGG                                                                                                          >  2:1833282/1‑95
                          TGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑ACGTCGTATCGCCATC                                                                                      <  2:1739504/100‑1
                           gaacccGTGATCAAAGCGGCGCGTAAGGCGCTGGCAGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑ACGTCGTATCGCCATCC                                                                                     <  1:1649577/94‑1
                           GAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑ACGTCGTATCGCCATCC                                                                                     <  2:1376979/100‑1
                           GAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑ACGTCGTATCGCCATCC                                                                                     <  2:1052835/100‑1
                            AACTGGTGATCAAAGCGGGGCGTAAGGCGCGGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAGTCGGATGGCG‑‑ACGTCGTATCGCCATCC                                                                                     <  2:648363/99‑1
                            AACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑ACGTCGTATCGCCATCCG                                                                                    <  1:3313692/100‑1
                                                cggAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTC                                                                <  1:964795/97‑1
                                                              GGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACG‑‑TCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCA                                                  <  1:450976/100‑1
                                                                          AAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACG‑‑TCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCG                                      >  1:1442159/1‑100
                                                                                      AGCGTAATATCAAATCGGATGGCGATACGACG‑‑TCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCG                          >  1:4093448/1‑100
                                                                                       GCGTAATATCAAATCGGATGGCGATACGACG‑‑TCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGC                         >  1:2784855/1‑100
                                                                                                    TCGGATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGT            <  2:316283/100‑1
                                                                                                     CGGATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTT           >  1:2927180/1‑100
                                                                                                      GGATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTC          >  1:469966/1‑100
                                                                                                      GGATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTC          <  1:1434970/100‑1
                                                                                                      GGATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTC          >  1:2568648/1‑100
                                                                                                      GGATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTC          >  1:715409/1‑100
                                                                                                      GGATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTC          <  1:1836859/100‑1
                                                                                                       GATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCA         <  2:3747472/100‑1
                                                                                                        ATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCAC        >  2:2962735/1‑100
                                                                                                        ATGGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCAC        <  2:2805215/100‑1
                                                                                                         TGGTG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACA       <  1:2247252/100‑1
                                                                                                         TGGCG‑‑ACGTCGTATCGCCATCCGATGTGATATTACGCGTCTTCGACACTTACGCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACA       <  1:3702222/100‑1
                                                                                                          GGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACAC      >  1:3406189/1‑100
                                                                                                          GGCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACAC      <  1:468346/100‑1
                                                                                                           GCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACT     >  2:3945239/1‑100
                                                                                                           GCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACT     >  1:1415559/1‑100
                                                                                                           GCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACT     >  2:3341019/1‑100
                                                                                                           GCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACT     >  2:1598848/1‑100
                                                                                                           GCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCCCCGCTTTCATCACCACTTCACA       >  2:4047182/1‑98
                                                                                                           GCG‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTAGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCATTGATCACCAGTTCACACT     >  2:3168484/1‑100
                                                                                                             G‑‑ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGT   <  1:59685/100‑1
                                                                                                                ACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTn  <  1:3821671/100‑2
                                                                                                                                                                                                                    
CCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCG‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3220781‑3220891
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcg‑‑aCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATGGCCGCCAGCGCCTTACGCGCCGCTTTGATCACCAGTTCACACTGTT  <  NC_000913/3220898‑3220800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.