| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1040547 = | NA (NA) | 19 (0.140) | 9/158 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1040579 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
AATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1040655‑1040547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT > NC_000913/1040579‑1040677 AATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCC < 1:2281489/100‑1AATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCC > 1:2525120/1‑100 ATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCG < 1:825830/100‑1 ATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCG < 1:1752527/100‑1 ATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCG < 1:2372182/100‑1 CAGAAGAGATAAAAATGGGCTTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA > 2:2821577/1‑100 CAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA > 2:3899249/1‑100 CAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCA < 1:3416294/100‑1 agaaaaaaaAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGC < 2:1862548/89‑1 AGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCAT < 2:3662108/100‑1 AGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCAT > 1:3613035/1‑100 AGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCAT > 2:121116/1‑100 AGAAGAGAGAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTGTGCATATCGGGCATTATGGATTGCCTGATGCGATGCTACTGCGCCGCAT > 2:2575645/1‑100 GAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATC > 2:4027026/1‑100 AAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCA > 2:598973/1‑100 AGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCAT > 2:2381175/1‑97 GAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG < 2:3008243/100‑1 GAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGG > 2:3437956/1‑100 AGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC < 2:21325/100‑1 AGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC < 1:3239136/100‑1 TTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCG > 1:3723432/1‑100 CGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATG > 1:1748618/1‑100 nTTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAAT > 2:4010344/2‑97 ATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCC > 2:1299190/1‑100 ATTGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 2:61145/1‑100 ATTGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTA > 1:830435/1‑100 TGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATC > 2:800832/1‑100 TGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATC > 2:3857044/1‑100 TGCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATC > 1:2108332/1‑100 GCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT > 2:3762128/1‑100 GCCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT > 1:2280931/1‑100 aCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC > 1:1436793/2‑100 CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC > 2:352574/1‑100 CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC > 2:2319388/1‑100 CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC > 1:2689180/1‑100 CCTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTC > 1:2528028/1‑100 CTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCT > 1:644054/1‑100 CTGATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCT > 2:330240/1‑100 GATGCGATGCTAATGCGCCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTC > 2:3431072/1‑100 CGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGC < 1:2917171/100‑1 CGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGC < 1:2917131/100‑1 CGCATCAGGCAATCAATAAGGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGC < 2:1644434/100‑1 GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCA > 2:3105641/1‑100 GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCA > 2:3071575/1‑100 GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCA < 1:3116233/100‑1 GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCA < 1:3719069/100‑1 GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGAGTCCGTTAACCCCGCA > 1:4110203/1‑100 GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATATCTTCTGATTCCGTTAACCCCG > 2:990790/1‑98 GCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGACCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAA > 1:751951/1‑93 TCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATC < 1:2625935/100‑1 AGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTG < 2:3825944/100‑1 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGC > 1:2258648/1‑100 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGC > 2:1788881/1‑100 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGC > 1:3197909/1‑100 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGC < 1:4006112/100‑1 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGC < 2:825826/100‑1 GGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGC < 1:3762156/100‑1 GCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTACCCCCGCAATCTGCA < 1:2143444/100‑1 CAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT > 2:3992547/1‑100 CAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT > 2:1014374/1‑100 AATCAGAAGAGATAAAAATGGGATTAAGATCGCTTTCATCGATATGTTTCCGCTTTTCATATCTGACATTATTGATTGCCTGATGCGATGCTAATGCGCCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1040655‑1040547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCAT > NC_000913/1040579‑1040677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |