| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3763978 = | 0 (0.000) | 8 (0.060) | 3/170 | NT | 32.0% | coding (1796/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3764008 = | 34 (0.240) | coding (1826/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
AGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAA > NC_000913/3763879‑3764076 | ggacggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtc > 2:3146365‑M1/100‑100 (MQ=255)ggacggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtc > 2:3544850‑M1/100‑100 (MQ=255) tccggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtcc > 1:1370476‑M1/99‑100 (MQ=255) ccggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCg < 1:1296179‑M1/3‑1 (MQ=255) ccggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCg < 2:515649‑M1/3‑1 (MQ=255) cggcagcatcgtattccatactgcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCg < 1:4150356‑M1/3‑1 (MQ=255) gcgcgttagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCGCCGTCATTGcc > 1:890705‑M1/75‑100 (MQ=255) cgtcagcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCGCCGTCATTGCCCCg > 2:1101222‑M1/72‑100 (MQ=255) agcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCGCCGTCATTGCCCCGGACg > 2:1897131‑M1/68‑100 (MQ=255) gcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCGCCGTCATTGCCCCGGACgg > 1:1406837‑M1/67‑100 (MQ=255) gccctgcgtggtacagatggcttttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCACCGTCATTGCCCCGGACGgcagc > 1:1635481‑M1/63‑100 (MQ=255) gccctgcgtggtacagatggcttttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCACCGTCATTGCCCCGGACGgcagc > 1:2148003‑M1/63‑100 (MQ=255) cgccctgcgtggtacagatggcttttccccacgcatcgtactgtgtcccgtttctgctgccgCCGGTGACCTGACCACCGTCATTGCCCCGGACGgcagc > 2:3677061‑M1/63‑100 (MQ=255) ctgcgtggtacagatggcttttccccacgcatcgtactgtgtcccgtttctgctgccgCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGaa > 1:2918688‑M1/59‑100 (MQ=255) gCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTaa > 2:1603884/1‑100 (MQ=31) gCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTaa > 2:3133423/1‑100 (MQ=31) | AGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAA > NC_000913/3763879‑3764076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |