| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3763978 = | 0 (0.000) | 8 (0.060) | 3/170 | NT | 32.0% | coding (1796/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3764008 = | 34 (0.240) | coding (1826/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
AGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGAC > NC_000913/3763911‑3764106 | agcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCGCCGTCATTGCCCCGGACg > 2:1897131‑M1/68‑100 (MQ=255) gcccgccctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCGCCGTCATTGCCCCGGACgg > 1:1406837‑M1/67‑100 (MQ=255) gccctgcgtggtacagatggcttttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCACCGTCATTGCCCCGGACGgcagc > 1:1635481‑M1/63‑100 (MQ=255) gccctgcgtggtacagatggcttttccccacgcatcgtactgtgtcccgtttctgctgccgtCCGGTGACCTGACCACCGTCATTGCCCCGGACGgcagc > 1:2148003‑M1/63‑100 (MQ=255) cgccctgcgtggtacagatggcttttccccacgcatcgtactgtgtcccgtttctgctgccgCCGGTGACCTGACCACCGTCATTGCCCCGGACGgcagc > 2:3677061‑M1/63‑100 (MQ=255) ctgcgtggtacagatggcttttccccacgcatcgtactgtgtcccgtttctgctgccgCCGGTGACCTGACCACCGTCATTGCCCCGGACGGCAGCAGaa > 1:2918688‑M1/59‑100 (MQ=255) ttctgctgccgtccggggcaatgacggtggtcaggtcaccgg‑CGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAg > 1:2918688‑M2/43‑100 (MQ=255) gctgccgtccggggcaatgacggtggtcaggtcaccggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAgggc > 1:2148003‑M2/39‑100 (MQ=255) gctgccgtccggggcaatgacggtggtcaggtcaccggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAgggc > 1:1635481‑M2/39‑100 (MQ=255) gctgccgtccggggcaatgacggtggtcaggtcaccgg‑CGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCATCTGTACCACGCAgggcg > 2:3677061‑M2/39‑100 (MQ=255) ccgtccggggcaatgacggcggtcaggtcaccggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAgggcgggc > 1:1406837‑M2/35‑100 (MQ=255) cgtccggggcaatgacggcggtcaggtcaccggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCt > 2:1897131‑M2/34‑100 (MQ=255) gCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTaa > 2:1603884/1‑100 (MQ=31) gCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTaa > 2:3133423/1‑100 (MQ=31) cggggcaatgacggcggtcaggtcaccggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGAcg > 2:1101222‑M2/30‑100 (MQ=255) CGGTGACCGGACCGCCGTCAATGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAAcg < 2:1813503‑M1/100‑1 (MQ=255) GGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAAcgc > 2:3861157‑M1/1‑100 (MQ=255) GTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAAcgcg > 1:2969818‑M1/1‑100 (MQ=255) GTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAAcgcg > 2:3764217‑M1/1‑100 (MQ=255) tgacctgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACgcgc < 1:1971660/100‑1 (MQ=33) ggcaatgacggcggtcaggtcaccggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACgcgc > 1:890705‑M2/27‑100 (MQ=255) gacctgaccGCCGTCCTTGCCCCGGACGCCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACgcgc < 1:187332/99‑1 (MQ=12) acctgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAg < 1:2273406/100‑1 (MQ=33) acctgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAg < 1:2999236/100‑1 (MQ=33) cctgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGt > 2:2642159/1‑100 (MQ=32) cctgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGt < 2:1534416/100‑1 (MQ=33) cctgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGt > 1:1101855/1‑100 (MQ=32) ctgagcGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTa < 2:142314/100‑1 (MQ=17) tgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTan < 1:3521021/100‑2 (MQ=18) tgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTa > 2:792805/1‑99 (MQ=32) tgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTAt < 1:3020753/100‑1 (MQ=33) tgaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTAt > 1:3466589/1‑100 (MQ=32) gaccGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATg < 1:3589172/100‑1 (MQ=33) accGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATgg < 2:3647543/100‑1 (MQ=33) accGCCGACATCGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCAGTCCGTACCGCGCAGGGCGGGCTAACGCGCAGTATgg < 1:342442/100‑1 (MQ=11) ccgccgTCATTGCCCCGGACGGCAGCAGAAACGGGATACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGa > 1:814928/1‑100 (MQ=17) ccgccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGa > 1:1874555/1‑100 (MQ=33) ccgccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGa < 2:1506408/100‑1 (MQ=33) ccgccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGa > 2:1462615/1‑100 (MQ=32) ccgccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGa > 1:2945627/1‑100 (MQ=33) ccaccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGa < 2:924134/97‑1 (MQ=18) cgcggTCGTTGCGCCGGACGGCGGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATgg < 1:1319435/98‑1 (MQ=11) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGaan < 1:2036953/100‑2 (MQ=18) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAAt < 2:3997217/100‑1 (MQ=33) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAAt < 1:3792794/100‑1 (MQ=33) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAAt < 1:910704/100‑1 (MQ=33) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAAt > 1:1215901/1‑100 (MQ=33) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAAt < 1:853230/100‑1 (MQ=33) cgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCATGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATAc > 1:1276111/1‑100 (MQ=18) cATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGAt > 1:739720/1‑100 (MQ=32) aTTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGAtg < 1:375424/100‑1 (MQ=33) aTTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGAtg < 1:2308781/100‑1 (MQ=33) ttGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGAtgc < 1:3357554/100‑1 (MQ=33) ttGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGAtgc < 2:761833/100‑1 (MQ=33) ccccGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTGTGGAATACGGtgctgc > 1:1810126/1‑100 (MQ=16) ccccGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGAtgctgc < 2:1215896/100‑1 (MQ=33) cccGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGcc > 1:496567/1‑100 (MQ=33) cggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg < 1:1296179‑M2/97‑1 (MQ=255) cggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg < 2:515649‑M2/97‑1 (MQ=255) cggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCg < 1:4150356‑M2/96‑1 (MQ=255) ggACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGa > 1:1370476‑M2/3‑100 (MQ=255) gACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTgccgtcc > 2:3146365‑M2/2‑97 (MQ=255) gACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTgccgtcc > 2:3544850‑M2/2‑97 (MQ=255) | AGCCGTGGACAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGAC > NC_000913/3763911‑3764106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |