New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 762891NA (NA)7 (0.050) 4/164 NT NA noncoding (130/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 762924 NA (NA)noncoding (163/167 nt) REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 164 total aligned reads displayed.

CGGCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAAC  >  NC_000913/762792‑762988
                                                                                                   |                                                                                                 
cGGCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGAt                                                                                                   <  1:3050493/100‑1 (MQ=255)
 ggCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATg                                                                                                  >  1:707914‑M1/1‑99 (MQ=255)
   cAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcc                                                                                                >  1:1564027‑M1/1‑97 (MQ=255)
   cAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcc                                                                                                <  2:2818738‑M1/100‑4 (MQ=255)
   cAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGAGgc                                                                                                 >  2:679579‑M1/1‑97 (MQ=255)
     aTTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctg                                                                                              >  2:550646‑M1/1‑95 (MQ=255)
     aTTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctg                                                                                              <  2:104271‑M1/100‑6 (MQ=255)
     aTTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctg                                                                                              >  1:2554156‑M1/1‑95 (MQ=255)
       tGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctgat                                                                                            <  1:3571811‑M1/100‑8 (MQ=255)
          aGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGCCCCCCCCGGTAGGTCCGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctgat                                                                                            <  2:415344‑M1/97‑8 (MQ=255)
           gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCACCCGACAAGCGATGCCTGATGTGa                                                                                        <  2:1229129/100‑1 (MQ=255)
              tGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACg                                                                                      >  2:2953201/1‑99 (MQ=255)
              tGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGt                                                                                     <  1:3349498/100‑1 (MQ=255)
               gATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGtt                                                                                    <  2:2488895/100‑1 (MQ=255)
                aTGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGttt                                                                                   <  2:1725774/100‑1 (MQ=255)
                 tGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTa                                                                                  >  1:3939041/1‑100 (MQ=255)
                  gCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTaa                                                                                 >  1:3854867/1‑100 (MQ=255)
                   cGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAAc                                                                                >  1:2013116/1‑100 (MQ=255)
                   cGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAAc                                                                                >  1:910666/1‑100 (MQ=255)
                   cGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAAc                                                                                >  1:1570148/1‑100 (MQ=255)
                    gACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACg                                                                               <  2:2675118/100‑1 (MQ=255)
                      cGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACgtg                                                                             >  1:1393845/1‑100 (MQ=255)
                      cGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACgtg                                                                             <  1:44268/100‑1 (MQ=255)
                      cGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACgtg                                                                             >  1:3736801/1‑100 (MQ=255)
                        cTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTc                                                                           <  1:2639806/100‑1 (MQ=255)
                        cTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTc                                                                           <  2:1374667/100‑1 (MQ=255)
                         tGACGCGTCTTATCAGGCCTCCGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGAAAAGCGATGCCTGATGTGACGTTTAACGTGTc                                                                           <  1:2266136/99‑1 (MQ=255)
                         tGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCt                                                                          <  2:3209905/100‑1 (MQ=255)
                          gACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCtt                                                                         <  2:1161004/100‑1 (MQ=255)
                           aagcgTATTATCAGGCCTACGTTACTATCAATGTAGGTCGGATAAGGCGCAAGCGCTGCATCCGACAATCGATGCCTGATGTGACGTTTAAcn                                                                               <  2:2382912/91‑2 (MQ=25)
                           aCGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTA                                                                        >  1:161454‑M2/1‑100 (MQ=255)
                           aCGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTA                                                                        >  2:343102‑M2/1‑100 (MQ=255)
                           aCGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTA                                                                        >  1:31998‑M2/1‑100 (MQ=255)
                           aCGCGTCTTATCAGGCCTACGCGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTA                                                                        >  2:2486900‑M2/1‑100 (MQ=255)
                             gcgTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATC                                                                      <  1:637137‑M2/100‑1 (MQ=255)
                             gcgTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATC                                                                      >  1:1233230‑M2/1‑100 (MQ=255)
                             gcgTCTTAGCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATC                                                                      >  1:4095710‑M2/1‑100 (MQ=255)
                               gTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAG                                                                    >  1:35293‑M2/1‑100 (MQ=255)
                                  ttATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGcc                                                                 >  2:913986/1‑100 (MQ=255)
                                  ttATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGcc                                                                 <  2:1265013/100‑1 (MQ=255)
                                  ttATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGcc                                                                 <  2:2209481/100‑1 (MQ=255)
                                   tATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGG                                                                   >  2:1685774‑M2/1‑97 (MQ=255)
                                    aTCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctgataagacacgttaaacgtcacatcaggcatc                                                               <  2:125882‑M1/100‑37 (MQ=255)
                                    aTCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctgataagacacgttaaacgtcacatcaggcatc                                                               <  2:1342074‑M1/100‑37 (MQ=255)
                                    aTCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctgataagacacgttaaacgtcacatcaggcatc                                                               <  2:2079069‑M1/100‑37 (MQ=255)
                                    aTCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctgataagacacgttaaacgtcacatcaggcatc                                                               <  1:852534‑M1/100‑37 (MQ=255)
                                    aTCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATTCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTa                                                               >  2:582338/1‑100 (MQ=255)
                                      cAGGCCTACGGGACCACCACTGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTa                                                               >  2:2098043/1‑98 (MQ=255)
                                      cAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACg                                                             >  2:3938556/1‑100 (MQ=255)
                                        ggCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACggg                                                           <  1:2349148/100‑1 (MQ=255)
                                          ccTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATgcctgataagacacgttaaacgtcacatcaggcatcgcttgt                                                         <  1:658409‑M1/100‑43 (MQ=255)
                                          ccTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTg                                                         <  2:3555270/100‑1 (MQ=255)
                                            tACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGAc                                                       >  1:1306142/1‑100 (MQ=255)
                                             aCGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGAcc                                                      <  2:3403668/100‑1 (MQ=255)
                                             aCGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGAcc                                                      >  1:2954196/1‑100 (MQ=255)
                                              cGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCg                                                     >  1:1425376/1‑100 (MQ=255)
                                                ggACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGAc                                                   >  1:2367089/1‑100 (MQ=255)
                                                ggACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCCAc                                                   >  2:1992025/1‑100 (MQ=255)
                                                   ccaccaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAAt                                                >  1:1878916/1‑100 (MQ=255)
                                                     accaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGc                                              >  1:2723300/1‑100 (MQ=255)
                                                     accaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGc                                              >  2:859876/1‑100 (MQ=255)
                                                     accaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGGTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGc                                              >  2:597588/1‑100 (MQ=255)
                                                      ccaATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGcc                                             >  1:1716949/1‑100 (MQ=255)
                                                         cttccgatctgATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCgg                                          <  2:1821693/90‑1 (MQ=255)
                                                          tGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGa                                         <  2:1750605/100‑1 (MQ=255)
                                                            tAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAg                                       <  1:1791852/100‑1 (MQ=255)
                                                               gTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGa                                    >  1:2441212/1‑100 (MQ=255)
                                                               gTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGa                                    <  1:1042658/100‑1 (MQ=255)
                                                                tCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGTGAt                                   <  1:3689123/100‑1 (MQ=255)
                                                                 ccgATAATGCGCAAGCGACGCATCGGATTAGCGATGCCTGATGTGACGGTTAACGTGTCGAAGCAGGCCTCCGGGTGACCGACAATGCCCGGAAGc                                      <  2:2017864/94‑1 (MQ=255)
                                                                  ggATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATAc                                 >  1:3765255/1‑100 (MQ=255)
                                                                  ggATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATAc                                 <  1:2674896/100‑1 (MQ=255)
                                                                  ggATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATAc                                 >  2:2102676/1‑100 (MQ=255)
                                                                   gATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGagatcggaag                                >  1:1821703/1‑91 (MQ=255)
                                                                    aTAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGa                               >  1:2199071/1‑100 (MQ=255)
                                                                      aaGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGaaa                             >  2:102697/1‑100 (MQ=255)
                                                                       aGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGGGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAat                            <  1:1350844/100‑1 (MQ=255)
                                                                        ggCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAata                           >  2:1588787/1‑100 (MQ=255)
                                                                        gacgcAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAata                           >  1:959562/3‑100 (MQ=255)
                                                                          cgcAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATAtt                         >  1:207083/1‑100 (MQ=255)
                                                                          cgcAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATAtt                         >  1:2641696/1‑100 (MQ=255)
                                                                           gcAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTc                        <  2:3748325/100‑1 (MQ=255)
                                                                            gacgcgcCGCATCCGAAAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGCCCTACAGCTGACCGACAATGCCCGGAAGCGATACGACATAtt                         >  2:1959342/4‑98 (MQ=255)
                                                                             aaGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCgg                      <  1:3602309/100‑1 (MQ=255)
                                                                             aaGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCgg                      >  2:1338619/1‑100 (MQ=255)
                                                                               gcgcCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTc                    <  1:1690040/100‑1 (MQ=255)
                                                                                 gccgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTa                  <  2:218945/100‑1 (MQ=255)
                                                                                  ccgcATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTAc                 >  1:2561773/1‑100 (MQ=255)
                                                                                    gcATCCGACAAGCCATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACgg               <  1:1359633/100‑1 (MQ=255)
                                                                                       tCCGACTAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGttt            <  2:1693520/100‑1 (MQ=255)
                                                                                       tCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTCCGGtt             >  2:2598089/1‑99 (MQ=255)
                                                                                        ccGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTa           <  2:3069431/100‑1 (MQ=255)
                                                                                          gACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTaaa         <  1:3468212/100‑1 (MQ=255)
                                                                                           aCAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTaaaa        <  1:2651958/100‑1 (MQ=255)
                                                                                              aGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacccacattggtagtcccgtaggcct     <  1:2356146‑M2/100‑62 (MQ=255)
                                                                                              aGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGAt     <  1:855544/100‑1 (MQ=255)
                                                                                                cGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctga   <  1:1556454‑M2/100‑64 (MQ=255)
                                                                                                 gATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCatcgcttgtcggatgcggcgcttgcgccttatccgacctacattggtggtcccgtaggcctgat  <  1:852534‑M2/100‑65 (MQ=255)
                                                                                                 gATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAAc  <  1:102699/100‑1 (MQ=255)
                                                                                                   tGCCTGATGTGACGTTTAACGTGTCTTAGCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAAc  <  2:1400079/98‑1 (MQ=255)
                                                                                                   |                                                                                                 
CGGCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTCGGTCTACGGTTTAAAAGATAAC  >  NC_000913/762792‑762988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.