New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2568139 =NA (NA)7 (0.050) 4/164 NT NA noncoding (1/183 nt) REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 3231282 = NA (NA)noncoding (31/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 220 total aligned reads displayed.

TCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCC  >  NC_000913/3231183‑3231381
                                                                                                   |                                                                                                   
tcCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGccc                                                                                                     >  1:657229/1‑100 (MQ=255)
 ccTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCt                                                                                                    >  1:1216926/1‑100 (MQ=255)
   tGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTAc                                                                                                  <  1:568161/100‑1 (MQ=255)
      aGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtg                                                                                               <  2:3120966/100‑1 (MQ=255)
        tGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtgtg                                                                                             <  1:2200135/100‑1 (MQ=255)
         gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            >  2:837589/1‑100 (MQ=255)
         gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                                                            >  1:728448/1‑100 (MQ=255)
           cgcgCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCaa                                                                                          >  1:1576828/1‑100 (MQ=255)
            gcgcATTTGTATATGTTGTATTAAGATGTTTTCCGTAAGCAATAATTTGCAACTGCTGCCGGATGCGGCGTAAACGCCCTATCCGCCCTACATGTGc                                                                                            >  2:1824857/1‑97 (MQ=37)
               cATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcct                                                                                      >  1:1738653/1‑100 (MQ=255)
                   tGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTg                                                                                  <  2:1057493/100‑1 (MQ=255)
                   tGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTg                                                                                  <  1:869592/100‑1 (MQ=255)
                   tGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTg                                                                                  >  1:3385891/1‑100 (MQ=255)
                     tataTGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGc                                                                                >  2:935684/1‑100 (MQ=255)
                       tatGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCg                                                                              >  1:2786971/1‑100 (MQ=255)
                       tatGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCg                                                                              <  1:260016/100‑1 (MQ=255)
                        atGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCgg                                                                             >  2:802118/1‑100 (MQ=255)
                         tgttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCgg                                                                             >  1:834623/1‑99 (MQ=255)
                         tgttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGa                                                                            >  2:3334689/1‑100 (MQ=255)
                           ttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATa                                                                          >  1:2239262/1‑100 (MQ=255)
                             gtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTCCATGTCCACTCCTCCTGGCCGGCTa                                                                          >  2:3601812/1‑98 (MQ=37)
                             gtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaa                                                                        <  1:4090289/100‑1 (MQ=255)
                             gtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaa                                                                        <  2:49331/100‑1 (MQ=255)
                              tataACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaaa                                                                       >  1:2839541/1‑100 (MQ=255)
                              tataACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaaa                                                                       <  2:2455597/100‑1 (MQ=255)
                               ataACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAc                                                                      <  2:896655/100‑1 (MQ=255)
                               ataACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAc                                                                      <  1:1951478/100‑1 (MQ=255)
                               ataACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTCGCCGGATAAAAc                                                                      >  2:1741629/1‑100 (MQ=255)
                                taACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcg                                                                     >  2:3989432/1‑100 (MQ=255)
                                taACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcg                                                                     >  2:3617973/1‑100 (MQ=255)
                                taACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcg                                                                     >  1:2313124/1‑100 (MQ=255)
                                 aaCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgc                                                                    >  2:4144802/1‑100 (MQ=255)
                                 aaCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgc                                                                    >  1:120365/1‑100 (MQ=255)
                                  aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgcg                                                                   >  1:2064295/1‑100 (MQ=255)
                                  aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgcg                                                                   >  2:175717/1‑100 (MQ=255)
                                  aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgcg                                                                   >  1:2025938/1‑100 (MQ=255)
                                  aCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcg                                                                     >  1:1633528/1‑98 (MQ=255)
                                   cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                                                  <  2:1310556/100‑1 (MQ=255)
                                    gATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGc                                                                 >  1:3888158/1‑100 (MQ=255)
                                     aTTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCa                                                                <  1:3182376/100‑1 (MQ=255)
                                         tttCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCg                                                            >  2:2133065/1‑100 (MQ=255)
                                          ttCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGAT‑AAACGCGGCAAGCGtt                                                          <  1:1035500/100‑1 (MQ=255)
                                           tCCATAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGtt                                                          >  1:13777/1‑100 (MQ=255)
                                            ccGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                                                         <  1:2721394/100‑1 (MQ=255)
                                            ccGTAAGCAATAATTTGCAACTGCTGGAGGATGCGGCGTAAACGCCTTATCCGCCATACATGTGTAATCCTCCTGGCCGGATAAAACGCGGCAAGCGt                                                           <  2:2881550/98‑1 (MQ=255)
                                            ccGTAAGCAATAATTTGCAACTACTGGCGGACGCGGCTTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                                                         <  2:2818380/100‑1 (MQ=255)
                                             cGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGc                                                        <  2:2905633/100‑1 (MQ=255)
                                              gTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCa                                                       >  1:3643272/1‑100 (MQ=255)
                                               tAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCAt                                                      <  1:3016547/100‑1 (MQ=255)
                                                aaGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATc                                                     >  1:431942/1‑100 (MQ=255)
                                                 aGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATcc                                                    >  2:3668393/1‑100 (MQ=255)
                                                  gCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCg                                                   >  1:2301668/1‑100 (MQ=255)
                                                  gCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCg                                                   <  1:2585768/100‑1 (MQ=255)
                                                    aataatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGc                                                 <  2:2755278/100‑1 (MQ=255)
                                                        atTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAAc                                              >  2:2290566/1‑99 (MQ=255)
                                                         tttGCAACTGCTGTCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCATTCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTg                                            <  2:2477850/100‑1 (MQ=255)
                                                         tgtGCAACTGCTGGCGGATGCGGCGTAATCGCCTTATCCGCCCTACATGTGCAAGCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAAc                                              <  2:587243/96‑1 (MQ=255)
                                                                ctgctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCCACTGCACcgcg                                     >  2:38616/1‑100 (MQ=255)
                                                                ctgctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACcgcg                                     <  1:1695315/100‑1 (MQ=255)
                                                                ctgctgGCGGATGCGGCGTAAACGCCTTATCCGACCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGACAAGCGTTGCATCCGGCAACTGCACcgc                                      >  2:2506161/1‑99 (MQ=255)
                                                                 tgctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCgcgc                                    >  1:437850/1‑100 (MQ=255)
                                                                  gctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGcc                                   <  1:1474267/100‑1 (MQ=255)
                                                                    tgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCAc                                 <  1:2420094/100‑1 (MQ=255)
                                                                     ggCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACt                                >  2:640599/1‑100 (MQ=255)
                                                                       cggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTgg                              >  1:47467‑M2/29‑100 (MQ=255)
                                                                        ggataaggcgtttacgccgcatccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                             >  1:3407960‑M2/28‑100 (MQ=255)
                                                                        ggATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                             <  1:959663/100‑1 (MQ=255)
                                                                        ggATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGc                             <  2:3705079/100‑1 (MQ=255)
                                                                           tGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGAGAAAACGCGGCAAGCATTGCAGCCGGCAACTGCACCGCGCCACTGGCGGa                          >  1:2484322/1‑100 (MQ=255)
                                                                            gcggcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGAt                         <  1:2919385/100‑1 (MQ=255)
                                                                             cggcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAGACGCGACAAGCGTCGCATCCGGCATCTGCACCGCGCCAcagatcggca                        >  2:2536168/1‑91 (MQ=17)
                                                                             cggcgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATg                        >  1:3116066/1‑100 (MQ=255)
                                                                             cggcgT‑AACGCCTTATCCGCCCTACATGTGCAACCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTCCACCGCGCCACTGGCGGATgc                       >  2:2755362/1‑100 (MQ=18)
                                                                                cgTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgcgg                     >  1:2119493/1‑100 (MQ=255)
                                                                                 gTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgcggc                    <  1:1533766/100‑1 (MQ=255)
                                                                                 gTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgcggc                    <  2:2414825/100‑1 (MQ=255)
                                                                                  tAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATgcggcg                   <  1:1855005/100‑1 (MQ=255)
                                                                                   aaaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGt                  >  1:1857716/1‑100 (MQ=255)
                                                                                    aaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTg                 <  2:1990995/100‑1 (MQ=255)
                                                                                    aaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTg                 <  2:546141/100‑1 (MQ=255)
                                                                                    aaCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTg                 >  1:2876544/1‑100 (MQ=255)
                                                                                     aCGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGa                <  2:2064285/100‑1 (MQ=255)
                                                                                       gCCTTATCCGCCCTACATGTGGCCGCCTCCTGGACTGATAAAACGCGGCTAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTg                 <  2:1781452/97‑1 (MQ=18)
                                                                                        ccTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACg             <  1:3504665/100‑1 (MQ=255)
                                                                                        ccTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACg             >  1:182564/1‑100 (MQ=255)
                                                                                        ccTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACg             >  2:2116982/1‑100 (MQ=255)
                                                                                        ccTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACg             >  1:3335242/1‑100 (MQ=255)
                                                                                         cTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGc            >  1:526208/1‑100 (MQ=255)
                                                                                          ttATCCGCCCTACATGTGCAATCCTCCTGGTCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc           <  1:3948328/100‑1 (MQ=255)
                                                                                          ttATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc           <  1:1674529/100‑1 (MQ=255)
                                                                                          ttATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGcc           <  1:3366345/100‑1 (MQ=255)
                                                                                            atccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCt          >  2:2209‑M2/8‑99 (MQ=255)
                                                                                             tccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCtt         <  2:3385865‑M2/93‑1 (MQ=255)
                                                                                             tccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTa        >  2:1473213‑M2/7‑100 (MQ=255)
                                                                                             tccgccCTACATGTGCAAGCCTCCTGGCCGGATAAACCGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTa        <  2:3815476‑M2/94‑1 (MQ=255)
                                                                                              ccgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTAt       <  2:1636628‑M2/95‑1 (MQ=255)
                                                                                               cgccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATc      >  1:3776315‑M2/5‑100 (MQ=255)
                                                                                                gccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATcc     <  2:746157‑M2/97‑1 (MQ=255)
                                                                                                 ccCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCg    >  1:2492565‑M2/3‑100 (MQ=255)
                                                                                                   cTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGcc  >  2:1120055/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACTGGCGGATGCGGCGTGAACGCCTTATCCGCC  >  NC_000913/3231183‑3231381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.