New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2133431NA (NA)13 (0.090) 8/164 NT NA intergenic (‑34/+59) wcaA/wzc putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase
?NC_000913 = 2133461 NA (NA)noncoding (30/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences

CGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2133333‑2133431
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG  <  NC_000913/2133461‑2133357
                                                                                                                                                                                                            
CGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTG                                                                                                          <  2:3688572/100‑1
 GAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGC                                                                                                         >  1:226168/1‑100
  AATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCC                                                                                                        >  2:2524314/1‑100
  AATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCC                                                                                                        <  1:1297432/100‑1
   ATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCG                                                                                                       <  2:3772971/100‑1
   ATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCG                                                                                                       <  2:2229134/100‑1
   ATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCG                                                                                                       <  2:2612615/100‑1
   ATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCG                                                                                                       <  2:472799/100‑1
    TCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGG                                                                                                      <  1:1980787/100‑1
    TCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGG                                                                                                      >  2:3728179/1‑100
     CGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGA                                                                                                     >  1:3868564/1‑100
     CGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGA                                                                                                     <  2:2672795/100‑1
     CGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGA                                                                                                     >  1:2764455/1‑100
     CGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGA                                                                                                     >  1:255096/1‑100
     CGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGA                                                                                                     >  1:254940/1‑100
      gccaacaacTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT                                                                                                    >  2:2708529/10‑100
      GCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT                                                                                                    >  2:943457/1‑100
      GCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT                                                                                                    >  2:3761286/1‑100
      GCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT                                                                                                    >  1:3965499/1‑100
      GCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT                                                                                                    >  1:4079482/1‑100
      GCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT                                                                                                    >  2:319274/1‑100
      GCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT                                                                                                    <  1:188052/100‑1
      GCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGAT                                                                                                    >  1:116822/1‑100
                GGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCA                                                                                          <  2:255097/100‑1
                GGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGGTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCA                                                                                          <  2:254941/100‑1
                             CGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                             <  2:3906380/100‑1
                             CGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                             <  1:1782852/100‑1
                              GGCATATAGATTGAGTTCAGCGGATTGTTGTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                            <  1:1125164/100‑1
                              GGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                            <  1:1125165/100‑1
                              GGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                            <  1:2017338/100‑1
                               GCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAA                                                                           <  2:764699/100‑1
                                CATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAG                                                                          <  2:2133056/100‑1
                                 ATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGC                                                                         <  2:1978798/100‑1
                                  TATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCA                                                                        <  2:3434707/100‑1
                                  TATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGGTCTCCCGGGTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGCAAG                                                                          <  2:116822/98‑1
                                                                      GTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAA                                    <  1:563205/100‑1
                                                                                               GCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATAT           >  1:2969697/1‑100
                                                                                                nTTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATAT           >  1:80058/2‑99
                                                                                                CTTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATG          >  2:2743006/1‑100
                                                                                                 TTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATAgcc         >  2:526970/1‑97
                                                                                                   GCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCG       >  1:3773816/1‑100
                                                                                                   GCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATACCG       >  1:490/1‑100
                                                                                                   GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCG       >  2:3868581/1‑100
                                                                                                   GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCG       >  2:3555342/1‑100
                                                                                                   GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCC        <  2:2213397/99‑1
                                                                                                   GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCC        <  1:3033824/99‑1
                                                                                                   GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCC        <  1:3872540/99‑1
                                                                                                      GGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACC    <  2:954567/100‑1
                                                                                                      GGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACC    >  1:476906/1‑100
                                                                                                      GGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACC    <  2:3051359/100‑1
                                                                                                       GATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCT   <  1:1819832/100‑1
                                                                                                       GATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACC    <  2:3614824/99‑1
                                                                                                       GATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGATCATAAGCCGGGAAAACAACCTATGAAAAACAATCAGCTGCTCTACATCTATATGCCGACn    <  1:627707/99‑2
                                                                                                        ATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG  <  2:2901156/100‑1
                                                                                                        ATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG  <  1:49324/100‑1
                                                                                                        ATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG  >  1:26975/1‑100
                                                                                                        ATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG  <  1:1152683/100‑1
                                                                                                        ATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG  <  2:1979041/100‑1
                                                                                                                                                                                                            
CGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2133333‑2133431
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGTTCACGCCGCATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTG  <  NC_000913/2133461‑2133357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.