| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4624213 = | 138 (0.900) | 5 (0.030) | 4/168 | NT | 3.9% | coding (577/645 nt) | ytjB | SMP_2 family putative membrane‑anchored periplasmic protein |
| ? | NC_000913 | 4624245 = | 119 (0.820) | coding (545/645 nt) | ytjB | SMP_2 family putative membrane‑anchored periplasmic protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4624315‑4624213‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGT > NC_000913/4624245‑4624342 GATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTGGC > 1:1101659/1‑100GATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTGGC < 1:559128/100‑1 TAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTGGCAG > 2:884197/1‑100 TAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTGGCAG > 2:2075372/1‑100 TAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTGGCAG < 2:1757474/100‑1 ACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTGGCAGC < 1:4246136/99‑1 CGCACGCTGCTACAGGGTAAACGCACCCGCTGGCAGCGTGCGGGTCAGCACTACACCGCTTGCCAGTGAGTGCAGCAACATCAGGCGTAAAATGTTAGTG > 1:3946215/1‑100 CGCACGCTGCTACAGGGTAAACGCACCCGCTGGCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGTAGCAACATCAGGCGTAAAATGTTAGTG > 1:2033557/1‑100 GCACGCTGCTACAGGGTAAACGCACCCGCTGGCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGG > 1:1377094/1‑100 CACGCTGCTACAGGGTAAACGCACCCGCTGGCAGCGTGCGGGTCAGCACAACACCGATTGACAGTGAGAGCAGCAACATCAGGCGCAAAATGTTAGTGG > 1:1077942/1‑99 CTGCTACAGGGTAAACGCACACGCTGGCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTA > 1:230338/1‑100 GCAGTGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAG > 2:461234/1‑100 GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAG > 2:179091/1‑100 GCAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAG < 2:3038487/100‑1 CAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGC > 1:3937999/1‑100 CAGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGC < 2:3119333/100‑1 AGCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCG < 2:3553339/100‑1 GCGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGT > 2:2304526/1‑100 GCGGGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGT < 1:1004737/100‑1 GATAACACCACTAACATTTTACGCCTGATGTTGCTGCTCTCACTGGCAATCGGTGTAGTGCTGACCCGCACGCTGCTACAGGGTAAACGCACCCGCTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4624315‑4624213‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcGTGCGGGTCAGCACTACACCGATTGCCAGTGAGAGCAGCAACATCAGGCGTAAAATGTTAGTGGTGTTATCCACCTGTTGGGCTTCGGTGGCGAGCGT > NC_000913/4624245‑4624342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |