New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1382894	NA (NA)	6 (0.040)	5/164	NT	NA	noncoding (28/74 nt)	REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 1382910	NA (NA)					noncoding (44/74 nt)	REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences

TCACGACGAAGGCGACAGTGATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1382789‑1382894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatccgGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGGAATT  <  NC_000913/1382910‑1382812                                                                                                                                                                                                               TCACGACGAAGGCGACAGTGATATATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTT                                                                                                           <  1:2676114/100‑1  CACGACGAAGGCGACAGTGATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTT                                                                                                          <  2:1593169/100‑1  CACGACGAAGGCGACAGTGATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGGACTTT                                                                                                          <  1:930893/100‑1   ctGACGAAGGCGACAGTGATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTA                                                                                                         <  2:1554440/98‑1    CGACGAAGGCGACAGTGATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTAT                                                                                                        <  2:3043394/100‑1     GACGAAGGCGACAGTGATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTAag                                                                                                       >  1:1554436/1‑98      ACGAAGGCGACAGTGATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCC                                                                                                      <  1:205694/100‑1                             CATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGGCCTACATTTATAGATCGGATA                                                                               <  1:1481590/100‑1                                 ATGCAGGTGGCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGGCCTACATTTATAGATCGGATAAAGT                                                                           <  1:688306/100‑1                                  TGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGGCCTACATTTATAGATCGGATAAAGTA                                                                          <  2:3249927/100‑1                                  TGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGGCCTACATTTATAGATCGGATAAAGTA                                                                          <  2:1548769/100‑1                                      GGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGGCCTACATTTATAGATCGGATAAAGTACTCG                                                                      <  1:753483/100‑1                                        TGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCGGCCTACATTTATAGATCGGATAAAGTACTCGCG                                                                    <  1:1273907/100‑1                                                                                                     TATCCGGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAAT        >  1:3047275/1‑99                                                                                                     TATCCGGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAAT        >  1:2094057/1‑99                                                                                                      ATCCGGCCTACATTTATAGATCGGATACAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGG      >  1:1194980/1‑100                                                                                                      ATCCGGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGG      >  2:3646095/1‑100                                                                                                        CCGGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGGAA    >  2:2066630/1‑100                                                                                                         CGGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGGAAT   <  1:3152367/100‑1                                                                                                         CGGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGGAAT   >  1:3118475/1‑100                                                                                                         CGGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGGAAT   <  2:2497094/100‑1                                                                                                          GGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGGAATT  >  2:3377856/1‑100                                                                                                                                                                                                               TCACGACGAAGGCGACAGTGATAAATTCCATTATGCAGGTGTCGGCGTAAATTACTCGTTCTGATAATGGGCTAAATTGCCGGATGCGGCGCGAGTACTTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1382789‑1382894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttatccgGCCTACATTTATAGATCGGATAAAGTACTCGCGCCGCATCCGGCAATTTAGCCCATTATCAGAACGAGTAATTTACGCCGACACCTGCATAATGGAATT  <  NC_000913/1382910‑1382812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.