New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2593024NA (NA)11 (0.080) 7/164 NT NA noncoding (47/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 2593056 NA (NA)noncoding (79/83 nt) REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 220 total aligned reads displayed.

CGACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCACTTAGCGC  >  NC_000913/2592926‑2593122
                                                                                                  |                                                                                                  
cgacgaCTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATg                                                                                                   >  2:3217490‑M1/1‑99 (MQ=255)
cgacgaCTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATg                                                                                                   >  2:3151830‑M1/1‑99 (MQ=255)
cgacgaCTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATg                                                                                                   >  1:3726565‑M1/1‑99 (MQ=255)
  acgacTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcc                                                                                                 <  1:349599‑M1/100‑4 (MQ=255)
       tGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATg                                                                                            >  2:2956130/1‑100 (MQ=255)
       tGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATg                                                                                            <  2:1100679/100‑1 (MQ=255)
        ggCCGAAAAAGGATCAACCGAAGAAGTAGGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGc                                                                                           <  1:2386836/100‑1 (MQ=255)
        ggCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGc                                                                                           <  2:3504266/100‑1 (MQ=255)
        ggCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGc                                                                                           >  2:2096069/1‑100 (MQ=255)
         gCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCg                                                                                          <  2:952398/100‑1 (MQ=255)
         gCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCg                                                                                          >  2:4160884/1‑100 (MQ=255)
           cGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGAc                                                                                        >  2:815979/1‑100 (MQ=255)
           cGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGAc                                                                                        >  2:569932/1‑100 (MQ=255)
           cGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGAc                                                                                        >  1:3337989/1‑100 (MQ=255)
           cGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGAc                                                                                        >  1:1249674/1‑100 (MQ=255)
            gAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACg                                                                                       <  2:1317874/100‑1 (MQ=255)
             aaaaaGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGc                                                                                      >  2:1399189/1‑100 (MQ=255)
              aaaaGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCt                                                                                     <  2:2224859/100‑1 (MQ=255)
              aaaaGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCt                                                                                     >  2:2539277/1‑100 (MQ=255)
               aaaTGATCAACCTAAGAATTAAGCTGAGTGCTCAACCGTTGGCCGGATAAGGCGTTAACGCCGCATCCTGCAATGGTGAACGATGCCTGATGCGACGCTc                                                                                    <  1:3270138/100‑1 (MQ=25)
                  ggATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAATGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCAcg                                                                                 <  1:3631699/100‑1 (MQ=255)
                  ggATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCAcg                                                                                 >  1:300021/1‑100 (MQ=255)
                  ggATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCAcg                                                                                 >  2:3369812/1‑100 (MQ=255)
                   gATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCAcgc                                                                                >  1:2869650/1‑100 (MQ=255)
                    aTCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCAcgcg                                                                               >  1:4027468/1‑100 (MQ=255)
                    aTCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCAcgcg                                                                               <  1:1963966/100‑1 (MQ=255)
                      cAACCGAATAATTAAGCTGAGTTCTCAACCGTAGTGCGGAGAAGTCGTGAACGCCGCATCCTGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTc                                                                             <  2:3565508/100‑1 (MQ=25)
                      cAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTc                                                                             <  2:4126802/100‑1 (MQ=255)
                       aaCCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCt                                                                            <  1:2310795/100‑1 (MQ=255)
                       aaCCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCt                                                                            <  2:729128/100‑1 (MQ=255)
                        aCCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCt                                                                            <  1:1004445/99‑1 (MQ=255)
                         ccGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTA                                                                          >  2:4263046‑M2/1‑100 (MQ=255)
                         ccGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTA                                                                          <  2:3001091‑M2/100‑1 (MQ=255)
                         ccGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTA                                                                          >  2:548304‑M2/1‑100 (MQ=255)
                            aagaagTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCA                                                                       >  2:267057‑M2/1‑100 (MQ=255)
                              gaagTAAGCTGAGTGCTCTACCGTAGGCCGGATAAGGCGTTAACGCCGCTTCCGGCTATGGTGAACGATgcctgataagacgcgtgagcgtcgcatcagg                                                                     <  1:1525453‑M1/100‑32 (MQ=255)
                              gaagTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGG                                                                     >  1:1898796‑M2/1‑100 (MQ=255)
                              gaagTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACACCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACCCGTCTTATCAG                                                                      <  1:3205437‑M2/99‑1 (MQ=255)
                               aagTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgataagacgcgtgagcgtcgcatcaggc                                                                    <  1:1685471‑M1/100‑33 (MQ=255)
                               aagTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgataagacgcgtgagcgtcgcatcaggc                                                                    <  1:3657241‑M1/100‑33 (MQ=255)
                                agTGAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGcc                                                                   <  2:194571/100‑1 (MQ=255)
                                 gTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATgcctgataagacgcgtgagcgtcgcatcaggcat                                                                  <  1:3817516‑M1/100‑35 (MQ=255)
                                  tAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAg                                                                 <  2:3288938/100‑1 (MQ=255)
                                   aaGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAgg                                                                <  2:2746037/100‑1 (MQ=255)
                                    aGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGt                                                               <  1:1034800/100‑1 (MQ=255)
                                     gCTGCGTGCTCAACCGTAGGCCGGATAAGGCTTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAgg                                                                <  1:427581/98‑1 (MQ=255)
                                     gCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTa                                                              >  1:4122708/1‑100 (MQ=255)
                                     gCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTa                                                              >  2:1725805/1‑100 (MQ=255)
                                       tGAGTGCTCAACCGTAGGCCGGATAAGGCGATAAAGCCGCATCCGGCAATGGTGAACGATGACTGATGCGACGCTCACCCGTCTTATCAGGCCAg                                                                 >  1:1191037/1‑95 (MQ=21)
                                        gAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATc                                                           <  2:3308059/100‑1 (MQ=255)
                                        gAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATc                                                           <  1:3958210/100‑1 (MQ=255)
                                        gAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATc                                                           <  2:3959979/100‑1 (MQ=255)
                                          gTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATc                                                           <  1:1384763/98‑1 (MQ=255)
                                          gTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTg                                                         >  2:325922/1‑100 (MQ=255)
                                          gTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTg                                                         <  2:190814/100‑1 (MQ=255)
                                          gTGCTCAACCCTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCACTGGTGCACGATGCCTGACGCGACGCTCACCCGTCTGATCAGGCCAGGTAATcag                                                         >  1:718315/1‑98 (MQ=18)
                                             cTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCt                                                      <  1:3125992/100‑1 (MQ=255)
                                              tCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCtt                                                     >  2:1698316/1‑100 (MQ=255)
                                               cAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCttt                                                    >  1:1137177/1‑100 (MQ=255)
                                                aaCCGTAGGCCGGATAAGGCGTTAACGCCGCATCAGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCtttt                                                   <  1:2243829/100‑1 (MQ=255)
                                                 aCCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTa                                                  >  2:2380055/1‑100 (MQ=255)
                                                  ccGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAc                                                 >  1:2587056/1‑100 (MQ=255)
                                                  ccGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTGAc                                                 <  2:163552/100‑1 (MQ=255)
                                                   ccattgCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAca                                                >  2:3390343/6‑100 (MQ=25)
                                                   cGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAca                                                >  2:3396839/1‑100 (MQ=255)
                                                     attgCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCCGGCCAGGTAATCTGTCTTTTAcatc                                              >  2:3589281/4‑100 (MQ=25)
                                                      aGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAcatca                                             <  2:3665467/100‑1 (MQ=255)
                                                       tgCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCCGGCCAGGTAATCTGTCTTTTAcatcat                                            >  2:112308/2‑100 (MQ=37)
                                                       ggCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTAcatca                                             >  1:1800025/1‑99 (MQ=255)
                                                        gCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAtt                                           >  1:1469710/1‑100 (MQ=37)
                                                        gCCGGATGCGGCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAtt                                           >  2:1895419/1‑100 (MQ=37)
                                                         ccggatgcggCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCCGCCCCGGTAATCTGTCTTTTACATCAttt                                          >  2:2312986/9‑100 (MQ=25)
                                                         ccggatgcggCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAttt                                          >  2:3095115/9‑100 (MQ=37)
                                                         ccggatgcggCGTTAACGCCTTATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCAttt                                          >  1:2480960/9‑100 (MQ=37)
                                                          cGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTc                                         <  1:4170981/100‑1 (MQ=255)
                                                           ggATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCa                                        <  2:285278/100‑1 (MQ=255)
                                                             aTAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCaa                                       <  2:3887208/99‑1 (MQ=255)
                                                              tAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATc                                     <  2:1212587/100‑1 (MQ=255)
                                                               aaGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATca                                    >  1:2956982/1‑100 (MQ=255)
                                                                 ggCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATcaca                                  <  1:956874/100‑1 (MQ=255)
                                                                 ggCGTTAACGCCGCATCAGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCATATCAGACCAGGAAATCTGTCTTTTACATCATTTCAATcaca                                  >  1:426830/1‑100 (MQ=37)
                                                                  gCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATcac                                   <  1:3951000/98‑1 (MQ=255)
                                                                   cGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCAcatc                                <  1:3415288/100‑1 (MQ=255)
                                                                      tAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCCTTTCAATCAcatcat                              >  1:2019945/1‑99 (MQ=255)
                                                                        aCGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCAcatcatcat                           >  1:4231006/1‑100 (MQ=255)
                                                                         cgccgcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACatcatcatc                          >  2:1849514/1‑100 (MQ=255)
                                                                          gccgcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCCGTCTTTGACATCATTTCAATCACatcatcatc                          >  1:3885355/1‑99 (MQ=255)
                                                                            cgcATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGcc                       <  1:565774/100‑1 (MQ=255)
                                                                              cATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAg                     <  2:1066719/100‑1 (MQ=255)
                                                                              cATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAg                     <  2:2169367/100‑1 (MQ=255)
                                                                               aTCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAgg                    >  2:3632606/1‑100 (MQ=255)
                                                                                tCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGc                   >  2:407200/1‑100 (MQ=255)
                                                                                      aaTGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCg             >  1:1539545/1‑100 (MQ=255)
                                                                                        tGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGcc           >  1:1737508/1‑100 (MQ=255)
                                                                                        tGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGcc           <  2:2903860/100‑1 (MQ=255)
                                                                                         ggTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCa          >  2:2802560/1‑100 (MQ=255)
                                                                                         ggTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATAATTTCAATCACATCATCATCGCCAGGCTTACCGcaa          >  1:883021/1‑98 (MQ=255)
                                                                                            gAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCatcgttcaccattgccggatgcggcgttaacgccttatccggcctacggttgagcactcag       <  1:2188470‑M2/100‑62 (MQ=255)
                                                                                              aCGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCatcgttcaccattgccggatgcggcgttaacgccttatccggcctacggttgagcactcagct     <  1:945841‑M2/100‑64 (MQ=255)
                                                                                                 aTGCCTGATGCGACGCTCACGCGTCTTATCAGGCatcgttcaccattgccggatgcggcgttaacgccttatccggcctacggttgagcactcagcttac  <  1:901797‑M2/100‑67 (MQ=255)
                                                                                                  |                                                                                                  
CGACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAAGCTGAGTGCTCAACCGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAATGGTGAACGATGCCTGATGCGACGCTCACGCGTCTTATCAGGCCAGGTAATCTGTCTTTTACATCATTTCAATCACATCATCATCGCCAGGCTTACCGCCACTTAGCGC  >  NC_000913/2592926‑2593122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.