| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3428910 = | 23 (0.150) | 14 (0.100) | 8/168 | NT | 39.2% | intergenic (‑148/‑326) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| ? | NC_000913 | = 4207974 | NA (NA) | intergenic (‑442/‑173) | purH/rrsE | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTC > NC_000913/3428811‑3429009 | atgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg > 2:1501790‑M1/100‑100 (MQ=255)atgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg < 2:3972492‑M1/1‑1 (MQ=255) tgtgaatcacttcagacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc > 1:1226513‑M1/99‑100 (MQ=255) tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc < 1:558782‑M1/2‑1 (MQ=255) tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactatgaaagaggaaagcgtaatatacgccacctcgc < 1:3232696‑M1/2‑1 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg < 2:1696264‑M1/3‑1 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg < 1:2940951‑M1/3‑1 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg > 2:1534734‑M1/98‑100 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:1782796‑M1/4‑1 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:1754576‑M1/4‑1 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:1739415‑M1/4‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:790318‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:405798‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:1460974‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 2:494608‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 2:3116173‑M1/5‑1 (MQ=255) aatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 1:3045733‑M1/95‑99 (MQ=255) ggttcggttgaagagaaacatcctgaattgcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcgc > 2:4012066‑M1/74‑100 (MQ=255) ggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCG‑CTTT‑AGCGCACTGTcgcg > 1:2410061‑M1/74‑99 (MQ=255) gttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcgcg > 1:3766053‑M1/73‑100 (MQ=255) aacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcgcg > 2:834586‑M1/73‑100 (MQ=255) ttcggttgaagagaaaaagcctgatattcagggttgactctgaaagaggaaagggaaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGGCGCGa > 1:1611889‑M1/72‑100 (MQ=255) tcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCgan > 1:2367964‑M1/71‑99 (MQ=255) tcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAg > 1:2814396‑M1/71‑100 (MQ=255) caacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAg > 1:3802386‑M1/71‑100 (MQ=255) cggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 2:1299906‑M1/70‑100 (MQ=255) cggttgaagagaaaaatcctgaaatccagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 2:1261686‑M1/70‑100 (MQ=255) acgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGt > 2:3256683‑M1/69‑100 (MQ=255) agagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCg > 1:3446229‑M1/65‑100 (MQ=255) aatcctgaaattcaggtttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTGTCAGCTCACTGTCGCGAGGTGGCGTATATTa > 1:222434‑M1/56‑98 (MQ=255) aatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACg > 1:807875‑M1/56‑100 (MQ=255) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGTGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 1:1067274/1‑100 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt < 2:1131079/100‑1 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt < 2:1222655/100‑1 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 2:105282/1‑100 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt < 1:900773/100‑1 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 2:2750473/1‑100 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt < 1:2457566/100‑1 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt < 2:4133412/100‑1 (MQ=11) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt < 1:3813441/99‑1 (MQ=31) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 1:1135817/100‑1 (MQ=32) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct > 2:1702536/1‑100 (MQ=33) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTTAACCCTGAATTTCAGGAttttttttt > 1:410776/1‑97 (MQ=14) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGTTTTTTTtcta > 1:2650273/1‑99 (MQ=18) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtctc > 2:148240/1‑100 (MQ=35) aaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtctc > 2:3251147/1‑100 (MQ=35) gagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCtt < 2:1474098/100‑1 (MQ=38) gagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCtt > 2:717705/1‑100 (MQ=38) agCAGTTGCGTCGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCATAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc < 1:2032014/100‑1 (MQ=255) agCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc < 1:2031907/100‑1 (MQ=38) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg > 2:928620/1‑100 (MQ=40) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 1:127986/100‑1 (MQ=40) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 2:3951944/100‑1 (MQ=40) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 2:3286377/100‑1 (MQ=40) cAGTTGCGACGCGGCTTTCTGCTCACTGTCGCAAGGTGGCTTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 1:1268760/99‑1 (MQ=255) cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt < 2:3579308/100‑1 (MQ=40) tctGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg < 2:3213932/98‑1 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg < 1:1940196/100‑1 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg > 1:3281738/1‑100 (MQ=255) tGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttgtt > 2:58141/1‑100 (MQ=255) GCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCttcgttgaga < 1:3213920‑M1/100‑4 (MQ=255) | ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTC > NC_000913/3428811‑3429009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |